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Eukaryote cells have a flexible shape, which dynamically changes according to the function performed by the cell. One mechanism for deforming the cell membrane into the desired shape is through the expression of curved membrane proteins.…

生物物理 · 物理学 2018-12-05 Miha Fošnarič , Samo Penič , Aleš Iglič , Veronika Kralj-Iglič , Mitja Drab , Nir Gov

The elastic properties of the double-stranded DNA handles used in optical tweezers experiments on biomolecules are customarily modeled by an extensible worm-like chain model. Fitting such model to experimental data however is no trivial…

生物物理 · 物理学 2022-06-28 Alessandro Mossa , Ciro Cecconi

We study the elastic behaviour of a supercoiled DNA molecule. The simplest model is that of a rod like chain, involving two elastic constants, the bending and the twist rigidities. We show that this model is singular and needs a small…

凝聚态物理 · 物理学 2009-10-31 Claude Bouchiat , Marc Mezard

We amplify previous arguments why mean curvature should be used as measure of integration in calculating the effective bending rigidity of fluid membranes subjected to a weak background curvature. The stiffening of the membrane by its…

统计力学 · 物理学 2009-10-31 H. A. Pinnow , W. Helfrich

In various cellular processes, biofilaments like F-actin and F-tubulin are able to exploit chemical energy associated to polymerization to perform mechanical work against an external load. The force-velocity relationship quantitatively…

统计力学 · 物理学 2018-04-04 Alessia Perilli , Carlo Pierleoni , Giovanni Ciccotti , Jean-Paul Ryckaert

We use nonequilibrium molecular dynamics simulations to verify recent tube-model predictions that associative polymer networks exhibit broad stretch fluctuations during elongational flow. Simulations further show that these fluctuating…

软凝聚态物质 · 物理学 2025-04-11 Songyue Liu , Thomas C. O'Connor

The importance of nonlinearities in material constitutive relations has long been appreciated in the continuum mechanics of macroscopic rods. Although the moment (torque) response to bending is almost universally linear for small deflection…

软凝聚态物质 · 物理学 2009-11-10 Paul A. Wiggins , Rob Phillips , Philip C. Nelson

Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures.…

生物物理 · 物理学 2015-06-29 Mohammadhosein Razbin , Martin Falcke , Panayotis Benetatos , Annette Zippelius

Motivated by diverse phenomena in cellular biophysics, including bacterial flagellar motion and DNA transcription and replication, we study the overdamped nonlinear dynamics of a rotationally forced filament with twist and bend elasticity.…

软凝聚态物质 · 物理学 2009-10-31 Charles W. Wolgemuth , Thomas R. Powers , Raymond E. Goldstein

The dynamics of a flexible filament sedimenting in a viscous fluid are explored analytically and numerically. Compared to the well-studied case of sedimenting rigid rods, the introduction of filament compliance is shown to cause a…

流体动力学 · 物理学 2013-11-04 Lei Li , Harishankar Manikantan , David Saintillan , Saverio E. Spagnolie

Curvature in biological membranes can be generated by a variety of different molecular mechanisms such as protein scaffolding, lipid or protein asymmetry, cytoskeletal forces, etc. These mechanisms have the net effect of generating stresses…

Convergence extension, the simultaneous elongation of tissue along one axis while narrowing along a perpendicular axis, occurs during embryonic development. A fundamental process that contributes to shaping the organism, it happens in many…

软凝聚态物质 · 物理学 2023-03-06 Aondoyima Ioratim-Uba , Tanniemola B. Liverpool , Silke Henkes

We examine a model of non-self-avoiding, fluctuating surfaces as a candidate continuum string theory of surfaces in three dimensions. This model describes Dynamically Triangulated Random Surfaces embedded in three dimensions with an…

高能物理 - 理论 · 物理学 2007-05-23 Mark Bowick , Paul Coddington , Leping Han , Geoff Harris , Enzo Marinari

Entangled states are ubiquitous amongst fibrous materials, whether naturally occurring (keratin, collagen, DNA) or synthetic (nanotube assemblies, elastane). A key mechanical characteristic of these systems is their ability to reorganise in…

Force-induced deformations of a self-avoiding chain confined inside a cylindrical cavity, with diameter $D$, are probed using molecular dynamics simulations, scaling analysis, and analytical calculations. We obtain and confirm a simple…

软凝聚态物质 · 物理学 2009-11-13 Suckjoon Jun , D. Thirumalai , Bae-Yeun Ha

We study a slender filament beating in a viscous fluid with novel curvature-dependent bending stiffness. Our numerical and experimental investigations reveal that such differential stiffness can sustain planar bending waves far along…

Many-body interactions in systems of active matter can cause particles to move collectively and self-organize into dynamic structures with long-range order. In cells, the self-assembly of cytoskeletal filaments is critical for cellular…

软凝聚态物质 · 物理学 2020-05-26 Jeffrey M. Moore , Matthew A. Glaser , Meredith D. Betterton

Eukaryotic flagella are active structures with a complex architecture of microtubules, motor proteins and elastic links. They are capable of whiplike motions driven by motors sliding along filaments that are themselves constrained at an…

软凝聚态物质 · 物理学 2012-11-22 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan , Michael F. Hagan

Motivated by recent experiments showing the buckling of microtubules in cells, we study theoretically the mechanical response of, and force propagation along elastic filaments embedded in a non-linear elastic medium. We find that, although…

软凝聚态物质 · 物理学 2009-11-13 Moumita Das , Alex J. Levine , F. C. MacKintosh

The morphological dynamics, instabilities and transitions of elastic filaments in viscous flows underlie a wealth of biophysical processes from flagellar propulsion to intracellular streaming, and are also key to deciphering the rheological…

流体动力学 · 物理学 2018-11-09 Yanan Liu , Brato Chakrabarti , David Saintillan , Anke Lindner , Olivia du Roure