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The linear (Winkler) foundation is a simple model widely used for decades to account for the surface response of elastic bodies. It models the response as purely local, linear, and perpendicular to the surface. We extend this model to the…

软凝聚态物质 · 物理学 2022-03-01 Chen Bar-Haim , Haim Diamant

Fiberboids are active filaments trapped at the interface of two phases, able of harnessing energy (and matter) fluxes across the interface in order to produce a rolling-like self-propulsion. We discuss several table-top examples and develop…

软凝聚态物质 · 物理学 2020-05-19 Antony Bazir , Arthur Baumann , Falko Ziebert , Igor M. Kulic

The force-extension relation for a semi-flexible polymer such as DNA confined in a nanoslit is investigated and it is found that both the effective persistence length and the form of the force-extension relation change as the chain goes…

软凝聚态物质 · 物理学 2014-12-10 Hendrick W. de Haan , Tyler N. Shendruk

When a flexible filament is confined to a fluid interface, the balance between capillary attraction, bending resistance, and tension from an external source can lead to a self-buckling instability. We perform an analysis of this instability…

软凝聚态物质 · 物理学 2013-02-12 Arthur A. Evans , Saverio E. Spagnolie , Denis Bartolo , Eric Lauga

Single molecule experiments on single- and double stranded DNA have sparked a renewed interest in the force-extension of polymers. The extensible Freely Jointed Chain (FJC) model is frequently invoked to explain the observed behavior of…

生物物理 · 物理学 2009-11-07 Cornelis Storm , Philip Nelson

This paper aims at a comprehensive understanding on the novel elastic property of double-stranded DNA (dsDNA) discovered very recently through single-molecule manipulation techniques. A general elastic model for double-stranded biopolymers…

软凝聚态物质 · 物理学 2009-10-31 Haijun Zhou , Yang Zhang , Zhong-can Ou-Yang

We investigate structural and dynamical properties of a self-propelled filament using coarse-grained Brownian dynamics simulations. A self-propulsion force is applied along the bond vectors, i.e., tangent to the filament and their locations…

软凝聚态物质 · 物理学 2019-02-14 Shalabh K. Anand , Sunil P. Singh

Twisted assemblies of filaments in ropes, cables and bundles are essential structural elements in wide use in macroscopic materials as well as within the cells and tissues of living organisms. We develop the unique, non-linear elastic…

软凝聚态物质 · 物理学 2015-05-18 Gregory M. Grason

Spatial organisation is a hallmark of all living cells, and recreating it in model systems is a necessary step in the creation of synthetic cells. It is therefore of both fundamental and practical interest to better understand the basic…

生物物理 · 物理学 2017-12-19 Jaime Agudo-Canalejo , Ramin Golestanian

The strength of the spin-orbit interaction relevant to transport in a low dimensional structure depends critically on the relative geometrical arrangement of current carrying orbitals. Recent tight-binding orbital models for spin transport…

介观与纳米尺度物理 · 物理学 2017-10-20 Solmar Varela , Vladimiro Mujica , Ernesto Medina

The biological function of membranes is closely related to their softness, which is often studied through the membranes' thermally-driven fluctuations. The analysis commonly assumes that the relaxation rate of a pure bending deformation is…

软凝聚态物质 · 物理学 2024-07-09 Hammad A. Faizi , Rony Granek , Petia M. Vlahovska

Cilia are motile biological appendages that are driven to bend by internal shear stresses between tubulin filaments. A continuum model of ciliary material is constructed that incorporates the essential ciliary constraints: (1)…

软凝聚态物质 · 物理学 2013-05-29 Mark A. Peterson

The chiral nature of DNA plays a crucial role in cellular processes. Here we use magnetic tweezers to explore one of the signatures of this chirality, the coupling between stretch and twist deformations. We show that the extension of a…

生物大分子 · 定量生物学 2009-09-29 Timothee Lionnet , Sylvain Joubaud , Richard Lavery , David Bensimon , Vincent Croquette

We study the over-damped dynamics of individual one-dimensional elastic filaments subjected to a chiral active force which propels each point of the filament at a fixed angle relative to the tangent vector of the filament at that point.…

软凝聚态物质 · 物理学 2026-03-09 Chanania Steinbock , Daniel A. Beller

While stretching of most polymer chains leads to rather featureless force-extension diagrams, some, notably DNA, exhibit non-trivial behavior with a distinct plateau region. Here we propose a unified theory that connects force-extension…

介观与纳米尺度物理 · 物理学 2013-02-26 Alexander V. Savin , Mikhail A. Mazo , Irina P. Kikot , Alexey V. Onufriev

In this paper, we present a theory to efficiently deal with mechanical properties of heterogeneous polymer chain in free space and the central problem is to evaluate the diffusion equation and orientation-orientation correlation function,…

生物物理 · 物理学 2019-11-05 Ming Li , Jizeng Wang

Using path integral technique, we show exactly that for a semiflexible biopolymer in constant extension ensemble, no matter how long the polymer and how large the external force, the effects of short range correlations in the…

生物物理 · 物理学 2009-11-13 Zicong Zhou , Bela Joos

A recurring motif in the organization of biological tissues are networks of long, fibrillar protein strands effectively confined to cylindrical surfaces. Often, the fibers in such curved, quasi-2D geometries adopt a characteristic order:…

生物物理 · 物理学 2015-12-23 Cyril Vrusch , Cornelis Storm

A DNA-protein complex modelled by a semiflexible chain and an attractive spherical core is studied in the situation when an external stretching force is acting on one end monomer of the chain while the other end monomer is kept fixed in…

软凝聚态物质 · 物理学 2009-11-10 Takahiro Sakaue , Hartmut Löwen

Biological membranes are host to proteins and molecules which may form domain-like structures resulting in spatially-varying material properties. Vesicles with such heterogeneous membranes can exhibit intricate shapes at equilibrium and…

软凝聚态物质 · 物理学 2023-06-22 Prerna Gera , David Salac , Saverio E. Spagnolie