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相关论文: Reducing Tile Complexity for the Self-Assembly of …

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The field of algorithmic self-assembly is concerned with the computational and expressive power of nanoscale self-assembling molecular systems. In the well-studied cooperative, or temperature 2, abstract tile assembly model it is known that…

计算复杂性 · 计算机科学 2017-05-31 Pierre-Étienne Meunier , Damien Woods

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

计算复杂性 · 计算机科学 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

计算复杂性 · 计算机科学 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

In this paper, we extend existing results about simulation and intrinsic universality in a model of tile-based self-assembly. Namely, we work within the 2-Handed Assembly Model (2HAM), which is a model of self-assembly in which assemblies…

计算几何 · 计算机科学 2015-03-17 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

新兴技术 · 计算机科学 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

This short survey of recent work in tile self-assembly discusses the use of simulation to classify and separate the computational and expressive power of self-assembly models. The journey begins with the result that there is a single…

计算几何 · 计算机科学 2013-09-06 Damien Woods

Majumder, Reif and Sahu have presented a stochastic model of reversible, error-permitting, two-dimensional tile self-assembly, and showed that restricted classes of tile assembly systems achieved equilibrium in (expected) polynomial time.…

计算复杂性 · 计算机科学 2009-08-04 Aaron Sterling

Self-assembly is one of the prevalent strategies used by living systems to fabricate ensembles of precision nanometer-scale structures and devices. The push for analogous approaches to create synthetic nanomaterials has led to the…

The ability to design and synthesize ever more complicated colloidal particles opens the possibility of self-assembling a zoo of complex structures, including those with one or more self-limited length scales. An undesirable feature of…

In this paper we investigate the computational power of the polygonal tile assembly model (polygonal TAM) at temperature 1, i.e. in non-cooperative systems. The polygonal TAM is an extension of Winfree's abstract tile assembly model (aTAM)…

计算几何 · 计算机科学 2015-08-20 Oscar Gilbert , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Self-assembly is a process which is ubiquitous in natural, especially biological systems. It occurs when groups of relatively simple components spontaneously combine to form more complex structures. While such systems have inspired a large…

计算几何 · 计算机科学 2018-07-19 Jerome Durand-Lose , Jacob Hendricks , Matthew J. Patitz , Ian Perkins , Michael Sharp

We consider a model of algorithmic self-assembly of geometric shapes out of square Wang tiles studied in SODA 2010, in which there are two types of tiles (e.g., constructed out of DNA and RNA material) and one operation that destroys all…

计算复杂性 · 计算机科学 2010-07-09 Erik D. Demaine , Matthew J. Patitz , Robert T. Schweller , Scott M. Summers

We prove that if a set $X \subseteq \Z^2$ weakly self-assembles at temperature 1 in a deterministic tile assembly system satisfying a natural condition known as \emph{pumpability}, then $X$ is a finite union of semi-doubly periodic sets.…

离散数学 · 计算机科学 2009-03-12 David Doty , Matthew J Patitz , Scott M Summers

We consider staged self-assembly systems, in which square-shaped tiles can be added to bins in several stages. Within these bins, the tiles may connect to each other, depending on the glue types of their edges. Previous work by Demaine et…

数据结构与算法 · 计算机科学 2017-01-03 Erik D. Demaine , Sándor P. Fekete , Christian Scheffer , Arne Schmidt

We show here that a model called directed self-assembly at temperature 1 is unable to do complex computations like the ones of a Turing machine. Since this model can be seen as a generalization of finite automata to 2D languages, a logical…

计算复杂性 · 计算机科学 2020-11-20 Pierre-Étienne Meunier , Damien Regnault

We define the Reflexive Tile Assembly Model (RTAM), which is obtained from the abstract Tile Assembly Model (aTAM) by allowing tiles to reflect across their horizontal and/or vertical axes. We show that the class of directed temperature-1…

计算几何 · 计算机科学 2015-03-13 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

We demonstrate existence of a tile assembly system that self-assembles the statistically self-similar Sierpinski Triangle in the Winfree-Rothemund Tile Assembly Model. This appears to be the first paper that considers self-assembly of a…

计算复杂性 · 计算机科学 2011-07-21 Aaron Sterling

We prove that if a subset X of the integer Cartesian plane weakly self-assembles at temperature 1 in a deterministic (Winfree) tile assembly system satisfying a natural condition known as *pumpability*, then X is a finite union of doubly…

计算复杂性 · 计算机科学 2009-06-18 David Doty , Matthew J. Patitz , Scott M. Summers

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

计算复杂性 · 计算机科学 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

We consider the problem of fault-tolerance in nanoscale algorithmic self-assembly. We employ a variant of Winfree's abstract Tile Assembly Model (aTAM), the two-handed aTAM, in which square "tiles" -- a model of molecules constructed from…

数据结构与算法 · 计算机科学 2015-03-14 David Doty , Matthew J. Patitz , Dustin Reishus , Robert T. Schweller , Scott M. Summers