相关论文: Comment on "A generalized Langevin formalism of co…

We present a detailed study of non-leptonic two-body decays of B mesons based on a generalized factorization hypothesis. We discuss the structure of non-factorizable corrections and present arguments in favour of a simple phenomenological…

In this paper we provide an alternative approach to the works of the physicists S. Cocco and R. Monasson about a model of DNA molecules. The aim is to predict the sequence of bases by mechanical stimulations. The model described by the…

Following the new description of an oriented full transformation on a finite chain given recently by Higgins and Vernitski in "Orientation-preserving and orientation-reversing mappings: a new description", Semigroup Forum 104 (2022),…

The main purpose of this paper is to show that ideas of deformation theory can be applied to "infinite dimensional geometry". We develop the deformation theory of Brody curves. Brody curve is a kind of holomorphic map from the complex plane…

We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition path theory we…

We prove in a very general framework several versions of the classical Poincar\'e-Birkhoff-Witt Theorem, which extend results from [BeGi, BrGa, CS, HvOZ, WW]. Applications and examples are discussed in the last part of the paper.

The equilibrium statistical properties of DNA denaturation bubbles are examined in detail within the framework of the Peyrard-Bishop-Dauxois model. Bubble formation in homogeneous DNA is found to depend crucially on the presence of…

We study the features on the unzipping process of a modified version of the Peyrard-Bishop- Dauxois model. We show that the inclusion of a barrier in the on-site potential allows for the existence of stable domain wall solutions between…

Modeling of DNA-protein interactions is a complex process involving many important time and length scales. This can be facilitated through the use of coarse-grained models which reduce the number of degrees of freedom and allow efficient…

Using quantum representations of mapping class groups we prove that profinite completions of Burnside-type surface group quotients are not virtually prosolvable, in general. Further, we construct infinitely many finite simple characteristic…

We investigate solitons in Peyrard-Bishop model of DNA molecule using Renormalization group methods which provide a systematic way for perturbation analysis. Small amplitude expansion is carried out in both the continuous and discrete…

Not only are Deep Neural Networks (DNNs) black box models, but also we frequently conceptualize them as such. We lack good interpretations of the mechanisms linking inputs to outputs. Therefore, we find it difficult to analyze in…

This paper studies the Unramified Fontaine-Mazur Conjecture for $ p $-adic Galois representations and its generalizations. We prove some basic cases of the conjecture and provide some useful criterions for verifying it. In addition, we…

A universal system of difference equations associated with a hyperelliptic curve is derived constituting the discrete analogue of the Dubrovin equations arising in the theory of finite-gap integration. The parametrisation of the solutions…

The effect of defects on the melting profile of short heterogeneous DNA chains are calculated using the Peyrard-Bishop Hamiltonian. The on-site potential on a defect site is represented by a potential which has only the short-range…

We explore probability modelling of discretization uncertainty for system states defined implicitly by ordinary or partial differential equations. Accounting for this uncertainty can avoid posterior under-coverage when likelihoods are…

A new approach is developed to derive the complete spectrum of exact interdimensional degeneracies for a quantum three-body system in D-dimensions. The new method gives a generalization of previous methods.

We present a general theory for predicting the interaction potentials between DNA-coated colloids, and more broadly, any particles that interact via valence-limited ligand-receptor binding. Our theory correctly incorporates the…

Recent advances in the understanding of the melting behavior of double-stranded DNA with statistical mechanics methods lead to improved estimates of the weight factors for the dissociation events of the chains, in particular for interior…

We establish a new Bernstein-type deviation inequality for general (non-reversible) discrete-time Markov chains via an elementary approach. More robust than existing works in the literature, our result only requires the Markov chain to…