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We suggest an explanation of typical incubation times statistical features based on the universal behavior of exit times for diffusion models. We give a mathematically rigorous proof of the characteristic right skewness of the incubation…

定量方法 · 定量生物学 2018-04-18 Yuri Bakhtin

A diffusion Monte Carlo algorithm is introduced that can determine the correct nodal structure of the wave function of a few-fermion system and its ground-state energy without an uncontrolled bias. This is achieved by confining signed…

计算物理 · 物理学 2020-02-05 Alexander A. Kunitsa , So Hirata

The Diffusion Monte Carlo method is devoted to the computation of electronic ground-state energies of molecules. In this paper, we focus on implementations of this method which consist in exploring the configuration space with a {\bf fixed}…

数值分析 · 数学 2007-05-23 Tony Lelievre , Mohamed El Makrini , Benjamin Jourdain

We present a general method for the derivation of various statistical quantities describing the detection of a beam of atoms emerging from a micromaser. The user of non-normalized conditioned density operators and a linear master equation…

量子物理 · 物理学 2016-09-08 David B. Johnson , W. C. Shieve

We report development of a novel instrument to measure tracer diffusion in water under nano-scale confinement. A direct optical access to the confinement region, where water is confined between a tapered fiber and a flat substrate, is made…

软凝聚态物质 · 物理学 2020-01-20 V. J. Ajith , Shivprasad Patil

In recent years, research and development in nanoscale science and technology have grown significantly, with electrical transport playing a key role. A natural challenge for its description is to shed light on anomalous behaviours observed…

种群与进化 · 定量生物学 2025-04-10 Sara Bernardi , Paolo Begnamino , Marco Pizzi , Lamberto Rondoni

The Diffusion Monte Carlo (DMC) method is applied to the water monomer, dimer, and hexamer, using q-TIP4P/F, one of the most simple, empirical water models with flexible monomers. The bias in the time step ($\Delta\tau$) and population size…

化学物理 · 物理学 2016-09-28 Joel D. Mallory , Sandra E. Brown , Vladimir A. Mandelshtam

Suspensions of low-diffusing particles in pipe flows exhibit a difference in age at different radial positions. Particles near the channel walls have higher residence times than the cross-sectional average. We quantify this effect using…

流体动力学 · 物理学 2025-09-25 Etienne Boulais , Richard D. Braatz

Reflected diffusions in polyhedral domains are commonly used as approximate models for stochastic processing networks in heavy traffic. Stationary distributions of such models give useful information on the steady state performance of the…

概率论 · 数学 2012-05-24 Amarjit Budhiraja , Jiang Chen , Sylvain Rubenthaler

Equality-constrained models naturally arise in problems in which measurements are taken at different levels of resolution. The challenge in this setting is that the models usually induce a joint distribution which is intractable. Resorting…

统计计算 · 统计学 2025-04-28 Shenggang Hu , Hongsheng Dai , Fanlin Meng , Louis Aslett , Murray Pollock , Gareth O. Roberts

The Diffusion Monte Carlo method with constant number of walkers, also called Stochastic Reconfiguration as well as Sequential Monte Carlo, is a widely used Monte Carlo methodology for computing the ground-state energy and wave function of…

统计理论 · 数学 2024-12-09 Michel Caffarel , Pierre del Moral , Luc de Montella

Long DNA molecules can be mapped by cutting them with restriction enzymes inside a narrow channel. Once cut, the individual fragments thus produced move away from each other due to diffusion and entropic effects. We investigate how long it…

软凝聚态物质 · 物理学 2025-06-11 Hanyang. Wang , Gary W Slater

The sampling of the configuration space in diffusion Monte Carlo (DMC) is done using walkers moving randomly. In a previous work on the Hubbard model [\href{https://doi.org/10.1103/PhysRevB.60.2299}{Assaraf et al.~Phys.~Rev.~B \textbf{60},…

An intercomparison of microdosimetric and nanodosimetric quantities simulated Monte Carlo codes is in progress with the goal of assessing the uncertainty contribution to simulated results due to the uncertainties of the electron interaction…

A biomimetic model of cell-cell communication was developed to probe the passive molecular transport across ion channels inserted in synthetic lipid bilayers formed between contacting droplets arranged in a linear array. Diffusion of a…

Monte Carlo simulation is used to study the dynamical crossover from single file diffusion to normal diffusion in fluids confined to narrow channels. We show that the long time diffusion coefficients for a series of systems involving hard…

软凝聚态物质 · 物理学 2015-06-17 Surajith N. Wanasundara , Raymond J. Spiteri , Richard K. Bowles

We apply random matrix theory to study the impact of measurement uncertainty on dynamic mode decomposition. Specifically, when the measurements follow a normal probability density function, we show how the moments of that density propagate…

统计方法学 · 统计学 2025-09-04 P. Algikar , P. Sharma , M. Netto , L. Mili

Advection-diffusion coupling can enhance particle and solute dispersion by orders of magnitude as compared to pure diffusion, with a steady state being reached for confined flow regions such as a nanopore or blood vessel. Here, by using…

We develop diffusion-based samplers for target distributions known up to a normalising constant. To this end, we rely on the well-known diffusion path that smoothly interpolates between a simple base distribution and the target, popularised…

Diffusion in an evolving environment is studied by continuos-time Monte Carlo simulations. Diffusion is modelled by continuos-time random walkers on a lattice, in a dynamic environment provided by bubbles between two one-dimensional…

软凝聚态物质 · 物理学 2010-11-22 Janne Juntunen , Juha Merikoski
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