中文

Generalized-Ensemble Algorithms: Enhanced Sampling Techniques for Monte Carlo and Molecular Dynamics Simulations

统计力学 2008-06-24 v1 定量方法

摘要

In complex systems with many degrees of freedom such as spin glass and biomolecular systems, conventional simulations in canonical ensemble suffer from the quasi-ergodicity problem. A simulation in generalized ensemble performs a random walk in potential energy space and overcomes this difficulty. From only one simulation run, one can obtain canonical-ensemble averages of physical quantities as functions of temperature by the single-histogram and/or multiple-histogram reweighting techniques. In this article we review the generalized-ensemble algorithms. Three well-known methods, namely, multicanonical algorithm, simulated tempering, and replica-exchange method, are described first. Both Monte Carlo and molecular dynamics versions of the algorithms are given. We then present five new generalized-ensemble algorithms which are extensions of the above methods.

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引用

@article{arxiv.cond-mat/0308360,
  title  = {Generalized-Ensemble Algorithms: Enhanced Sampling Techniques for Monte Carlo and Molecular Dynamics Simulations},
  author = {Y. Okamoto},
  journal= {arXiv preprint arXiv:cond-mat/0308360},
  year   = {2008}
}

备注

28 pages, (LaTeX); a review article to appear in Journal of Molecular Graphics and Modelling