English

Simulation of Lattice Polymers with Multi-Self-Overlap Ensemble

Condensed Matter 2009-10-31 v1

Abstract

A novel family of dynamical Monte Carlo algorithms for lattice polymers is proposed. Our central idea is to simulate an extended ensemble in which the self-avoiding condition is systematically weakened. The degree of the self-overlap is controlled in a similar manner as the multicanonical ensemble. As a consequence, the ensemble --the multi-self-overlap ensemble-- contains adequate portions of self-overlapping conformations as well as higher energy ones. It is shown that the multi-self-overlap ensemble algorithm reproduce correctly the canonical averages at finite temperatures of the HP model of lattice proteins. Moreover, it outperforms massively a standard multicanonical algorithm for a difficult example of a polymer with 8-stickers. Alternative algorithm based on exchange Monte Carlo method is also discussed.

Keywords

Cite

@article{arxiv.cond-mat/9807237,
  title  = {Simulation of Lattice Polymers with Multi-Self-Overlap Ensemble},
  author = {Yukito Iba and George Chikenji and Macoto Kikuchi},
  journal= {arXiv preprint arXiv:cond-mat/9807237},
  year   = {2009}
}

Comments

5 Pages, 4 Postscript figures, uses epsf.sty

R2 v1 2026-07-22T12:05:23.582Z