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In this letter we study the full semi-conservative treatment of a model for the co-evolution of a virus and an adaptive immune system. Regions of viability are calculated for both conservatively and semi-conservatively replicating viruses…

种群与进化 · 定量生物学 2009-11-10 Yisroel Brumer , Eugene I. Shakhnovich

Multicellular organisms comprise a diverse collection of stable tissues built from different cell types. It remains unclear how large numbers of interacting cells can precisely coordinate their gene expression during tissue…

生物物理 · 物理学 2022-10-31 Matthew Smart , Anton Zilman

This paper deals with the derivation of a collective model of cell populations out of an individual-based description of the underlying physical particle system. By looking at the spatial distribution of cells in terms of time-evolving…

数学物理 · 物理学 2014-11-12 Annachiara Colombi , Marco Scianna , Andrea Tosin

The problem of unicellular-multicellular transition is one of the main issues that is discussing in evolutionary biology. In [1] the fitness of a colony of cells is considered in terms of its two basic components, viability and fecundity.…

种群与进化 · 定量生物学 2015-06-08 Fuad Aleskerov , Denis Tverskoy

This paper develops a simplified set of models describing asexual and sexual replication in unicel- lular diploid organisms. The models assume organisms whose genomes consist of two chromosomes, where each chromosome is assumed to be…

种群与进化 · 定量生物学 2007-09-11 Emmanuel Tannenbaum

We discuss the mathematical modelling of two of the main mechanisms which pushed forward the emergence of multicellularity: phenotype divergence in cell differentiation, and between-cell cooperation. In line with the atavistic theory of…

偏微分方程分析 · 数学 2024-03-06 Frank Alvarez , Jean Clairambault

If two species exhibit different nonlinear responses to a single shared resource, and if each species modifies the resource dynamics such that this favors its competitor, they may stably coexist. This coexistence mechanism, known as…

种群与进化 · 定量生物学 2015-06-16 Florian Hartig , Tamara Münkemüller , Karin Johst , Ulf Dieckmann

How should dispersal strategies be chosen to increase the likelihood of survival of a species? We obtain the answer for the spatially extended versions of three well-known models of two competing species with unequal diffusivities. Though…

种群与进化 · 定量生物学 2020-07-08 Tapas Singha , Prasad Perlekar , Mustansir Barma

This paper presents a real-time simulation involving ''protozoan-like'' cells that evolve by natural selection in a physical 2D ecosystem. Selection pressure is exerted via the requirements to collect mass and energy from the surroundings…

神经与进化计算 · 计算机科学 2023-05-23 Dylan Cope

A mutualism is an interaction where the involved species benefit from each other. We study a two-dimensional hexagonal three-state cellular automaton model of a two-species mutualistic system. The simple model is characterized by four…

元胞自动机与格子气 · 物理学 2010-11-23 Andrew Adamatzky , Martin Grube

The interplay between energy efficiency and evolutionary mechanisms is addressed. One important question is how evolutionary mechanisms can select for the optimised usage of energy in situations where it does not lead to immediate…

种群与进化 · 定量生物学 2016-11-21 André Amado , Lenin Fernández , Weini Huang , Fernando F. Ferreira , Paulo R. A. Campos

Multilevel selection is an important organizing principle that crucially underlies evolutionary processes from the emergence of cells to eusociality and the economics of nations. Previous studies on multilevel selection assumed that the…

种群与进化 · 定量生物学 2016-06-22 Marvin A. Böttcher , Jan Nagler

In this research, we present a generalized quasispecies model in which population growth is governed by an arbitrary nonlinear function incorporating time delays. We begin by demonstrating that, under the constant population constraint, the…

动力系统 · 数学 2025-08-19 Nolbert Morales , Edward A. Turner

Vegetation patterns are a ubiquitous feature of water-deprived ecosystems. Despite the competition for the same limiting resource, coexistence of several plant species is commonly observed. We propose a two-species reaction-diffusion model…

种群与进化 · 定量生物学 2019-11-26 Lukas Eigentler , Jonathan A. Sherratt

In this paper I describe a cellular automaton model of a multi-species ecosystem, suitable for the study of emergent properties of macroevolution. Unlike majority of ecological models, the number of coexisting species is not fixed. Starting…

种群与进化 · 定量生物学 2009-09-23 Wojciech Borkowski

In a view for a simple model where natural selection at the individual level is confronted to selection effects at the group level, we consider some individual-based models of some large population subdivided into a large number of groups.…

概率论 · 数学 2023-07-13 Aurélien Velleret

For two resource-sharing species we explore the interplay of harvesting and dispersal strategies, as well as their influence on competition outcomes. Although the extinction of either species can be achieved by excessive culling, choosing a…

种群与进化 · 定量生物学 2025-12-12 Elena Braverman , Jenny Lawson

We study a stochastic model proposed recently in the genetic literature to explain the heterogeneity of cell populations or of gene products. Cells are located in two colonies, whose sizes fluctuate as birth and migration processes in…

种群与进化 · 定量生物学 2007-05-23 Martin Gander , Christian Mazza , Hansklaus Rummler

Understanding the emergence and evolution of multicellularity and cellular differentiation is a core problem in biology. We develop a quantitative model that shows that a multicellular form emerges from genetically identical unicellular…

种群与进化 · 定量生物学 2017-02-07 Iaroslav Ispolatov , Martin Ackermann , Michael Doebeli

We consider the evolution of populations under the joint action of mutation and differential reproduction, or selection. The population is modelled as a finite-type Markov branching process in continuous time, and the associated…

种群与进化 · 定量生物学 2009-02-23 Ellen Baake , Hans-Otto Georgii