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Evolutionary transitions occur when previously-independent replicating entities unite to form more complex individuals. Such transitions have profoundly shaped natural evolutionary history and occur in two forms: fraternal transitions…

种群与进化 · 定量生物学 2023-10-10 Matthew Andres Moreno , Charles Ofria

In a geographically distributed population, assortative clustering plays an important role in evolution by modifying local environments. To examine its effects in a linear habitat, we consider a one-dimensional grid of cells, where each…

种群与进化 · 定量生物学 2021-03-16 Sunhee Chae , Nahyeon Lee , Seung Ki Baek , Hyeong-Chai Jeong

The quasispecies model describes processes related to the origin of life and viral evolutionary dynamics. We discuss how the error catastrophe that reflects the transition from localized to delocalized quasispecies population is affected by…

种群与进化 · 定量生物学 2009-12-31 Nathaniel Wagner , Emmanuel Tannenbaum , Gonen Ashkenasy

We present a two-species population model in a well-mixed environment where the dynamics involves, in addition to birth and death, changes due to environmental factors and inter-species interactions. The novel dynamical components are…

生物物理 · 物理学 2020-09-17 J. J. Dong , J. D. Russo , K. Sampson

Consider a mathematical model of evolutionary adaptation of fitness landscape and mutation matrix as a reaction to population changes. As a basis, we use an open quasispecies model, which is modified to include explicit death flow. We…

种群与进化 · 定量生物学 2020-11-25 Igor Samokhin , Tatiana Yakushkina , Alexander S. Bratus

RNA viruses comprise vast populations of closely related, but highly genetically diverse, entities known as quasispecies. Understanding the mechanisms by which this extreme diversity is generated and maintained is fundamental when…

种群与进化 · 定量生物学 2021-05-27 Luiza Guimarães , Diogo Castro , Bruno Gorzoni , Luiz Mario Ramos Janini , Fernando Antoneli

We analyze the advantage of cell size control strategies in growing populations under mortality constraints. We demonstrate a general advantage of the adder control strategy in the presence of growth-dependent mortality, and for different…

生物物理 · 物理学 2023-03-15 Spencer Hobson-Gutierrez , Edo Kussell

Biological systems are modular, and this modularity evolves over time and in different environments. A number of observations have been made of increased modularity in biological systems under increased environmental pressure. We here…

种群与进化 · 定量生物学 2015-01-07 Jeong-Man Park , Liang Ren Niestemski , Michael W. Deem

Characterization of pluripotent states, in which cells can both self-renew and differentiate, and the irreversible loss of pluripotency are important research areas in developmental biology. In particular, an understanding of these…

分子网络 · 定量生物学 2015-09-02 Tadashi Miyamoto , Chikara Furusawa , Kunihiko Kaneko

Commonly recognized evolutionarily relevant effects of sexual reproduction include increased diversity, accelerated adaptation, and constrained accumulation of deleterious mutations, along with a secondary effect of species genotype…

种群与进化 · 定量生物学 2025-06-17 Assaf Marron , Smadar Szekely , Irun R. Cohen , David Harel

Here we consider a game theoretic model of multilevel selection in which individuals compete based on their payoff and groups also compete based on the average payoff of group members. Our focus is on multilevel social dilemmas: games in…

种群与进化 · 定量生物学 2019-12-10 Daniel B. Cooney

Dynamics maintaining diversity of cell types in a multi-cellular system are studied in relationship with the plasticity of cellular states. First, we introduce a new theoretical framework, reaction-diffusion system on `chemical species…

适应与自组织系统 · 物理学 2007-05-23 Hiroaki Takagi , Kunihiko Kaneko

We study the asymptotic behaviors of stochastic cell fate decision between proliferation and differentiation. We propose a model of a self-replicating Langevin system, where cells choose their fate (i.e. proliferation or differentiation)…

统计力学 · 物理学 2017-07-12 Hiroki Yamaguchi , Kyogo Kawaguchi , Takahiro Sagawa

We investigate the dynamics of a colony of crawling, proliferating cells with a minimal, mechanical cell model. The cells consist of two disks, modelling the cell body and a pseudopod, connected by a finite extensible spring. The cells…

细胞行为 · 定量生物学 2019-04-11 Simon K. Schnyder , John J. Molina , Ryoichi Yamamoto

Microbiological systems evolve to fulfill their tasks with maximal efficiency. The immune system is a remarkable example, where self-non self distinction is accomplished by means of molecular interaction between self proteins and antigens,…

细胞行为 · 定量生物学 2013-08-26 Marcio Argollo de Menezes , Edgardo Brigatti , Veit Schwämmle

A simple cellular automata model for a two-group war over the same territory is presented. It is shown that a qualitative advantage is not enough for a minority to win. A spatial organization as well a definite degree of aggressiveness are…

无序系统与神经网络 · 物理学 2016-08-31 Serge Galam , Bastien Chopard , Alexander Masselot , Michel Droz

A stochastic reaction-diffusion model is studied on a networked support. In each patch of the network two species are assumed to interact following a non-normal reaction scheme. When the interaction unit is replicated on a directed linear…

Multicellular tissues are the building blocks of many biological systems and organs. These tissues are not static, but dynamically change over time. Even if the overall structure remains the same there is a turnover of cells within the…

组织与器官 · 定量生物学 2021-02-12 Domenic P. J. Germano , James M. Osborne

This paper studies the mutation-selection balance in three simplified replication models. The first model considers a population of organisms replicating via the production of asexual spores. The second model considers a sexually…

种群与进化 · 定量生物学 2009-11-13 Emmanuel Tannenbaum

We consider a two-species simple exclusion process on a periodic lattice. We use the method of matched asymptotics to derive evolution equations for the two population densities in the dilute regime, namely a cross-diffusion system of…

数学物理 · 物理学 2023-01-25 James Mason , Robert L Jack , Maria Bruna