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This paper demonstrates that simple yet important characteristics of coevolution can occur in evolutionary algorithms when only a few conditions are met. We find that interaction-based fitness measurements such as fitness (linear) ranking…

神经与进化计算 · 计算机科学 2009-07-03 James M Whitacre

Large-scale structural patterns commonly occur in network models of complex systems including a skewed node degree distribution and small-world topology. These patterns suggest common organizational constraints and similar functional…

种群与进化 · 定量生物学 2011-04-04 Stuart R. Borrett , Brian D. Fath , Bernard C. Patten

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

统计力学 · 物理学 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

In ecology it is widely recognised that many landscapes comprise a network of discrete patches of habitat. The species that inhabit the patches interact with each other through a foodweb, the network of feeding interactions. The…

种群与进化 · 定量生物学 2017-08-11 Edmund Barter , Thilo Gross

Recent empirical studies suggest that heavy-tailed distributions of human activities are universal in real social dynamics [Muchnik, \emph{et al.}, Sci. Rep. \textbf{3}, 1783 (2013)]. On the other hand, community structure is ubiquitous in…

物理与社会 · 物理学 2015-01-14 Zhi-Xi Wu , Zhihai Rong , Han-Xin Yang

Understanding how cooperation evolves in structured populations remains a fundamental question across diverse disciplines. The problem of cooperation typically involves pairwise or group interactions among individuals. While prior studies…

物理与社会 · 物理学 2025-06-26 Dini Wang , Peng Yi , Gang Yan , Feng Fu

Aligning protein interaction networks (PPI) of two or more organisms consists of finding a mapping of the nodes (proteins) of the networks that captures important structural and functional associations (similarity). It is a well studied but…

分子网络 · 定量生物学 2020-10-12 Concettina Guerra , Pietro Hiram Guzzi

The significant role of space in maintaining species coexistence and determining community structure and function is well established. However, community ecology studies have mainly focused on simple competition and predation systems, and…

种群与进化 · 定量生物学 2010-08-09 Elise Filotas , Martin Grant , Lael Parrott , Per Arne Rikvold

Social interactions vary in time and appear to be driven by intrinsic mechanisms, which in turn shape the emerging structure of the social network. Large-scale empirical observations of social interaction structure have become possible only…

物理与社会 · 物理学 2015-12-09 Guillaume Laurent , Jari Saramäki , Márton Karsai

Understanding the dependence and interplay between architecture and function in biological networks has great relevance to disease progression, biological fabrication and biological systems in general. We propose methods to assess the…

定量方法 · 定量生物学 2009-10-17 Soumen Roy , Vladimir Filkov

Network science has emerged as a powerful tool through which we can study the higher-order architectural properties of the world around us. How human learners exploit this information remains an essential question. Here, we focus on the…

神经元与认知 · 定量生物学 2017-02-02 Elisabeth A. Karuza , Ari E. Kahn , Sharon L. Thompson-Schill , Danielle S. Bassett

Networks have become a key approach to understanding systems of interacting objects, unifying the study of diverse phenomena including biological organisms and human society. One crucial step when studying the structure and dynamics of…

物理与社会 · 物理学 2010-09-16 Yong-Yeol Ahn , James P. Bagrow , Sune Lehmann

Designing strong and robust bio-inspired structures requires an understanding of how function arises from the architecture and geometry of materials found in nature. We draw from trabecular bone, a lightweight bone tissue that exhibits a…

生物物理 · 物理学 2019-10-09 Chantal Nguyen , Darin Peetz , Ahmed E. Elbanna , Jean M. Carlson

A major achievement in the study of complex networks is the observation that diverse systems, from sub-cellular biology to social networks, exhibit universal topological characteristics. Yet this universality does not naturally translate to…

物理与社会 · 物理学 2018-01-29 Chittaranjan Hens , Uzi Harush , Reuven Cohen , Baruch Barzel

Complex network theory has recently been proposed as a promising tool for characterising interactions between aircraft, and their downstream effects. We here explore the problem of networks' topological predictability, i.e. the dependence…

物理与社会 · 物理学 2025-05-01 Raúl López-Martín , Massimiliano Zanin

We study the interplay between evolutionary game and network structure and show how the dynamics of the game affect the growth pattern of the network and how the evolution of the network influence the cooperative behavior in the game.…

物理与社会 · 物理学 2007-05-23 Jie Ren , Xiang Wu , Wen-Xu Wang , Guanrong Chen , Bing-Hong Wang

Spider webs are incredible biological structures, comprising thin but strong silk filament and arranged into complex hierarchical architectures with striking mechanical properties (e.g., lightweight but high strength, achieving diverse…

机器学习 · 计算机科学 2023-04-12 Wei Lu , Nic A. Lee , Markus J. Buehler

Despite the importance of a thermodynamically stable structure with a conserved fold for protein function, almost all evolutionary models neglect site-site correlations that arise from physical interactions between neighboring amino acid…

种群与进化 · 定量生物学 2013-12-04 Andrew J. Bordner , Hans D. Mittelmann

This paper presents an experimentally grounded model on the relevance of partner selection for the emergence of trust and cooperation among individuals. By combining experimental evidence and network simulation, our model investigates the…

物理与社会 · 物理学 2010-08-30 Riccardo Boero , Giangiacomo Bravo , Flaminio Squazzoni

Complex systems contain a lot of individuals and some interactions between them. The structure of interactions can be modeled to be a network: nodes represent individuals and links to be interaction between two individuals. This paper tries…

凝聚态物理 · 物理学 2007-05-23 Jing Han , Wei Li