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We present a theoretical description of the thermal fluctuations in a solid-supported stack of lipid bilayers, for the case of vanishing surface tension $\gamma = 0$ and in the framework of continuous smectic elasticity. The model is…

软凝聚态物质 · 物理学 2015-04-10 Doru Constantin , Ulrike Mennicke , Chenghao Li , Tim Salditt

The vortex matter in bulk type-II superconductors serves as a prototype system for studying the random pinning problem in condensed matter physics. Since the vortex lattice is embedded in an atomic lattice, small angle neutron scattering…

The presence and the properties of lipid bilayer nanometer-scale domains might be important for understanding the membranes of living cells. We used molecular dynamics (MD) simulations to investigate perturbations of a small patch of…

软凝聚态物质 · 物理学 2011-06-01 Frederick A. Heberle , David G. Ackerman , Gerald W. Feigenson

We present a simple and computationally efficient coarse-grained and solvent-free model for simulating lipid bilayer membranes. In order to be used in concert with particle-based reaction-diffusion simulations, the model is purely based on…

生物物理 · 物理学 2018-01-31 Mohsen Sadeghi , Thomas R. Weikl , Frank Noé

The structure of membrane-active peptides and their interaction with lipid bilayers can be studied in oriented lipid membranes deposited on solid substrates. Such systems are desirable for a number of surface-sensitive techniques. Here we…

软凝聚态物质 · 物理学 2015-04-10 Chenghao Li , Doru Constantin , Tim Salditt

We study phase behaviours of lipid--bilayer vesicles functionalised by ligand--receptor complexes made of synthetic DNA by introducing a modelling framework and a dedicated experimental platform. In particular, we perform Monte Carlo…

软凝聚态物质 · 物理学 2016-08-23 S. J. Bachmann , J. Kotar , L. Parolini , A. Šarić , P. Cicuta , L. Di Michele , B. M. Mognetti

The condensation of biomolecules into biomolecular condensates via liquid-liquid phase separation (LLPS) is a ubiquitous mechanism that drives cellular organization. To enable these functions, biomolecules have evolved to drive LLPS and…

生物大分子 · 定量生物学 2020-03-04 Erik W. Martin , Jesse B. Hopkins , Tanja Mittag

A hydrated 1,2-dimyristoyl-sn-glycero-3-phosphorylcholine (DMPC) lipid membrane is investigated using an all atom molecular dynamics simulation at 308K to find out the physical sources of universal slow relaxation of hydration layers.…

软凝聚态物质 · 物理学 2018-08-14 Abhinav Srivastava , Smarajit Karmakar , Ananya Debnath

Small-Angle Scattering (SAS) investigates structures in samples that generally range from approximately 0.5 nm to a few 100 nm. This can both be done for isotropic samples such as blends and liquids, as well as anisotropic samples such as…

仪器与探测器 · 物理学 2023-09-22 Sebastian Jaksch

We investigate the conformation, position, and dynamics of core-shell nanoparticles (CSNPs) composed of a silica core encapsulated in a cross-linked poly-N-isopropylacrylamide shell at a water-oil interface for a systematic range of core…

软凝聚态物质 · 物理学 2018-09-07 Siddarth A. Vasudevan , Astrid Rauh , Martin Kröger , Matthias Karg , Lucio Isa

During this experiment we were testing the hypothesis that standing waves in a phospholipid membrane stack indeed lead to a detectable signal in coherent grazing-incidence small-angle neutron scattering, GISANS. These modes were identified…

The study of vesicles in suspension is important to understand the complicated dynamics exhibited by cells in vivo and in vitro. We developed a computer simulation based on the boundary-integral method to model the three dimensional…

生物物理 · 物理学 2013-07-24 Ivan Rey Suarez , Chad Leidy , Gabriel Tellez , Guillaume Gay , Andres Gonzalez-Mancera

Quasielastic neutron scattering is a powerful tool for the study of non-periodic motions in condensed matter as a detailed line shape analysis can give information about the geometry and rate of the scatterers' displacements. Unfortunately,…

软凝聚态物质 · 物理学 2011-03-23 Sebastian Busch , Tobias Unruh

We use a coarse-grained molecular dynamics simulation to investigate the interaction between neutral or charged nanoparticles (NPs) and a vesicle consisting of neutral and negatively charged lipids. We focus on the interaction strengths of…

软凝聚态物质 · 物理学 2019-07-25 Naofumi Shimokawa , Hiroaki Ito , Yuji Higuchi

Neutron scattering and molecular dynamics studies were performed on a concentrated aqueous tetramethylammonium (TMA) chloride solution to gain insight into the hydration shell structure of TMA, which is relevant for understanding its…

We use boundary element simulations to study the interaction of model microswimmers with a neutrally buoyant spherical particle. The ratio of the size of the particle to that of the swimmer is varied from $R^\mathrm{P} / R^\mathrm{S} \ll…

软凝聚态物质 · 物理学 2017-11-01 Henry Shum , Julia M. Yeomans

Bending rigidity, k, is classically measured for lipid membranes to characterize their nanoscale mechanical properties as a function of composition. Widely employed as a comparative tool, it helps understanding the relationship between the…

软凝聚态物质 · 物理学 2023-10-24 Niki Baccile , Ingo Hoffmann , Vincent Chaleix

The sol-gel silica glasses doped with copper selenide nanoparticles were studied through small-angle neutron scattering (SANS) and transmission electron microscopy. SANS intensities demonstrate the complicated dependence on the scattering…

介观与纳米尺度物理 · 物理学 2021-12-03 V. S. Gurin , A. V. Rutkauskas , Yu. E. Gorshkova , S. E. Kichanov , A. A. Alexeenko , D. P. Kozlenko

Scattering structure factors provide essential insight into material properties and are routinely obtained in experiments, computer simulations, and theoretical analyses. Different approaches favor different geometries of the material. In…

软凝聚态物质 · 物理学 2018-05-15 Yongtian Luo , Lutz Maibaum

In this paper we present the results of a large-scale numerical investigation of structural properties of a model of cell membrane, simulated as a bilayer of flexible molecules in vacuum. The study was performed by carrying out extensive…

生物物理 · 物理学 2009-11-07 G. La Penna , S. Letardi , V. Minicozzi , S. Morante , G. C. Rossi , G. Salina