相关论文: Universal spectrum for DNA base C+G concentration …
A brief review of the manifestations of classical chaos observed in atomic systems is presented. Particular attention is paid to the analysis of atomic spectra by periodic orbit-type theories. For diamagnetic non-hydrogenic Rydberg atoms,…
It is a common assumption that quantum systems with time reversal invariance and classically chaotic dynamics have energy spectra distributed according to GOE-type of statistics. Here we present a class of systems which fail to follow this…
It is shown that distributed chaos, generated by Hamiltonian DNA dynamics with spontaneously broken time translational symmetry, imprints itself on the DNA sequence of Arabidopsis thaliana (a model plant for genetic sequencing and mapping)…
Chaotic systems that decompose into two cells connected only by a narrow channel exhibit characteristic deviations of their quantum spectral statistics from the canonical random-matrix ensembles. The equilibration between the cells…
This comment is in response to the paper by L. Guzzo recently appeared in ``New Astronomy'' related to our work. The subject of the discussion concerns the correlation properties of galaxy distribution in the available 3-d samples. There is…
We investigate the large-scale geometry of the DNA-protein complex of chromatin using a generalized optimality principle, which requires that not only should all sub-parts of a natural process be optimal but also the unfolding of higher…
The so called long range correlation properties of DNA sequences are studied using the variance analyses of the density distribution of a single or a group of nucleotides in a model independent way. This new method which was suggested…
We investigate the two-point correlations in the band spectra of spatially periodic systems that exhibit chaotic diffusion in the classical limit. By including level pairs pertaining to non-identical quasimomenta, we define form factors…
We present a theoretical study of the electron-phonon coupling in suspended nanoelectromechanical systems (NEMS) and investigate the resulting quantum chaotic behavior. The phonons are associated with the vibrational modes of a suspended…
This work investigates the quantum transport in a narrow constriction acted upon by a finite-range transversely polarized time-dependent electric field. A generalized scattering-matrix method is developed that has incorporated a…
Chromosomal rearrangements, which shuffle DNA throughout the genome, are an important source of divergence across taxa. Using a paired-end read approach with Illumina sequence data for archaic humans, I identify changes in genome structure…
When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…
Two fundamental empirical laws have been established in the analysis of galaxy space distribution. First, recent analyses have revealed that the three dimensional distribution of galaxies and clusters is characterized by large scale…
For the paradigmatic three-disk scattering system, we confirm a recent conjecture for open chaotic systems, which claims that resonance states are composed of two factors. In particular, we demonstrate that one factor is given by universal…
It is shown that the nucleotide sequences in DNA molecules have cluster-scaling properties (discovered for the first time in turbulent processes: Sreenivasan and Bershadskii, 2006, J. Stat. Phys., 125, 1141-1153.). These properties are…
Having spectral correlations that, over small enough energy scales, are described by random matrix theory is regarded as the most general defining feature of quantum chaotic systems as it applies in the many-body setting and away from any…
The mechanical model based on beads and springs, which we recently proposed to study non-specific DNA-protein interactions [J. Chem. Phys. 130, 015103 (2009)], was improved by describing proteins as sets of interconnected beads instead of…
Complexity metrics and machine learning (ML) models have been utilized to analyze the lengths of segmental genomic entities like: exons, introns, intergenic and repeat/unique DNA sequences, in each of the 22 human chromosomes. The purpose…
We investigate the diffusive properties of energy fluctuations in a one-dimensional diatomic chain of hard-point particles interacting through a square--well potential. The evolution of initially localized infinitesimal and finite…
Local diffusion coefficients in disordered materials such as living cells are highly heterogeneous. Quenched disorder is utilized substantially to study such complex systems, whereas its analytical treatment is difficult to handle. We…