相关论文: Reconstruction of permutations distorted by single…
A permutation p is realized by the shift on N symbols if there is an infinite word on an N-letter alphabet whose successive left shifts by one position are lexicographically in the same relative order as p. The set of realized permutations…
In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…
In this paper, we introduce plane permutations, i.e. pairs $\mathfrak{p}=(s,\pi)$ where $s$ is an $n$-cycle and $\pi$ is an arbitrary permutation, represented as a two-row array. Accordingly a plane permutation gives rise to three distinct…
In the trace reconstruction problem, the goal is to reconstruct an unknown string $x$ of length $n$ from multiple traces obtained by passing $x$ through the deletion channel. In the relaxed problem of $approximate$ trace reconstruction, the…
Embedding graphs in a geographical or latent space, i.e.\ inferring locations for vertices in Euclidean space or on a smooth manifold or submanifold, is a common task in network analysis, statistical inference, and graph visualization. We…
A permutation graph is a graph that can be derived from a permutation, where the vertices correspond to letters of the permutation, and the edges represent inversions. We provide a construction to show that there are infinitely many…
We prove that the problem of reconstructing a permutation $\pi_1,\dotsc,\pi_n$ of the integers $[1\dotso n]$ given the absolute differences $|\pi_{i+1}-\pi_i|$, $i = 1,\dotsc,n-1$ is NP-complete. As an intermediate step we first prove the…
In the context of the genome rearrangement problem, we analyze two well known models, namely the reversal and the prefix reversal models, by exploiting the connection with the notion of permutation pattern. More specifically, for any $k$,…
We prove that the combinatorial distance between any two reduced expressions of a given permutation of {1, ..., n} in terms of transpositions lies in O(n^4), a sharp bound. Using a connection with the intersection numbers of certain curves…
How efficiently can we find an unknown graph using distance queries between its vertices? We assume that the unknown graph is connected, unweighted, and has bounded degree. The goal is to find every edge in the graph. This problem admits a…
Consider a finite sequence of permutations of the elements 1,...,n, with the property that each element changes its position by at most 1 from any permutation to the next. We call such a sequence a tangle, and we define a move of element i…
Trace reconstruction considers the task of recovering an unknown string $x \in \{0,1\}^n$ given a number of independent "traces", i.e., subsequences of $x$ obtained by randomly and independently deleting every symbol of $x$ with some…
We count the number of occurrences of restricted patterns of length 3 in permutations with respect to length and the number of cycles. The main tool is a bijection between permutations in standard cycle form and weighted Motzkin paths.
Comtet introduced the notion of indecomposable permutations in 1972. A permutation is indecomposable if and only if it has no proper prefix which is itself a permutation. Indecomposable permutations were studied in the literature in various…
Motivated by applications in polymer-based data storage, we study the problem of reconstructing a string from part of its composition multiset. We give a full description of the structure of the strings that cannot be uniquely reconstructed…
The graph reconstruction conjecture states that all graphs on at least three vertices are determined up to isomorphism by their deck. In this paper, a general framework for this problem is proposed to simply explain the reconstruction of…
Twisted permutation codes, introduced recently by the second and third authors, are frequency permutation arrays. They are similar to repetition permutation codes, in that they are obtained by a repetition construction applied to a smaller…
We introduce a new model of indeterminacy in graphs: instead of specifying all the edges of the graph, the input contains all triples of vertices that form a connected subgraph. In general, different (labelled) graphs may have the same set…
Imagine that unlabelled tokens are placed on the edges of a graph, such that no two tokens are placed on incident edges. A token can jump to another edge if the edges having tokens remain independent. We study the problem of determining the…
In the beautifully simple-to-state problem of trace reconstruction, the goal is to reconstruct an unknown binary string $x$ given random "traces" of $x$ where each trace is generated by deleting each coordinate of $x$ independently with…