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We consider the Moran model of population genetics with two types, mutation, and selection, and investigate the line of descent of a randomly-sampled individual from a contemporary population. We trace this ancestral line back into the…

概率论 · 数学 2024-05-22 Ellen Baake , Enrico Di Gaspero , Fernando Cordero

The Moran model with recombination is considered, which describes the evolution of the genetic composition of a population under recombination and resampling. There are $n$ sites (or loci), a finite number of letters (or alleles) at every…

概率论 · 数学 2018-11-01 Mareike Esser , Sebastian Probst , Ellen Baake

Many applications in genetic analyses utilize sampling distributions, which describe the probability of observing a sample of DNA sequences randomly drawn from a population. In the one-locus case with special models of mutation such as the…

概率论 · 数学 2012-07-25 Anand Bhaskar , John A. Kamm , Yun S. Song

We study the genealogical distance of two randomly chosen individuals in a population that evolves according to a two type Moran model with mutation and selection. We prove that this distance is stochastically smaller than the corresponding…

概率论 · 数学 2018-04-24 Max Grieshammer

Natural populations often show enhanced genetic drift consistent with a strong skew in their offspring number distribution. The skew arises because the variability of family sizes is either inherently strong or amplified by population…

种群与进化 · 定量生物学 2022-01-13 Takashi Okada , Oskar Hallatschek

We reconsider the Moran model in continuous time with population size $N$, two allelic types, and selection. We introduce a new particle representation, which we call the labelled Moran model, and which has the same distribution of type…

种群与进化 · 定量生物学 2013-12-09 Sandra Kluth , Ellen Baake

Consider an advantageous allele that arises in a haploid population of size $N$ evolving in continuous time according to a skewed reproduction mechanism, which generates under neutrality genealogies lying in the domain of attraction of a…

概率论 · 数学 2024-09-02 Matthias Birkner , Florin Boenkost , Iulia Dahmer , Cornelia Pokalyuk

To understand the effect of assortative mating on the genetic evolution of a population, we consider a finite population in which each individual has a type, determined by a sequence of n diallelic loci. We assume that the population…

概率论 · 数学 2023-11-30 Alison M. Etheridge , Sophie Lemaire

Evolutionary models for populations of constant size are frequently studied using the Moran model, the Wright-Fisher model, or their diffusion limits. When evolution is neutral, a random genealogy given through Kingman's coalescent is used…

种群与进化 · 定量生物学 2012-07-31 Peter Pfaffelhuber , Benedikt Vogt

A steady influx of a single deleterious multilocus genotype will impose genetic load on the resident population and leave multiple descendants carrying various numbers of the foreign alleles. Provided that the foreign types are rare at…

种群与进化 · 定量生物学 2015-06-16 Alexey Yanchukov , Stephen R. Proulx

We investigate a continuous time, probability measure-valued dynamical system that describes the process of mutation-selection balance in a context where the population is infinite, there may be infinitely many loci, and there are weak…

种群与进化 · 定量生物学 2011-09-20 Steven N. Evans , David Steinsaltz , Kenneth W. Wachter

Weak purifying selection, acting on many linked mutations, may play a major role in shaping patterns of molecular evolution in natural populations. Yet efforts to infer these effects from DNA sequence data are limited by our incomplete…

种群与进化 · 定量生物学 2012-10-17 Benjamin H Good , Michael M Desai

The correlation among the gene genealogies at different loci is crucial in biology, yet challenging to understand because such correlation depends on many factors including genetic linkage, recombination, natural selection and population…

概率论 · 数学 2023-10-20 David Kogan , Dimitrios Diamantidis , John Wakeley , Wai-Tong Louis Fan

Many experimental and field studies have shown that adaptation can occur very rapidly. Two qualitatively different modes of fast adaptation have been proposed: selective sweeps wherein large shifts in the allele frequencies occur at a few…

种群与进化 · 定量生物学 2018-10-19 Kavita Jain , Wolfgang Stephan

Large populations may contain numerous simultaneously segregating polymorphisms subject to natural selection. Since selection acts on individuals whose fitness depends on many loci, different loci affect each other's dynamics. This leads to…

种群与进化 · 定量生物学 2011-08-09 Richard A. Neher , Boris I. Shraiman

We study the large population limit of the Moran process, assuming weak-selection, and for different scalings. Depending on the particular choice of scalings, we obtain a continuous model that may highlight the genetic-drift (neutral…

种群与进化 · 定量生物学 2013-01-21 Fabio A. C. C. Chalub , Max O. Souza

We study a population of $N$ individuals evolving according to a biparental Moran model with two types, one being advantaged compared to the other. The advantage is conferred by a Mendelian mutation, which reduces the death probability of…

概率论 · 数学 2026-03-24 Camille Coron , Yves Le Jan

In sexual populations, selection operates neither on the whole genome, which is repeatedly taken apart and reassembled by recombination, nor on individual alleles that are tightly linked to the chromosomal neighborhood. The resulting…

种群与进化 · 定量生物学 2014-03-25 Richard A. Neher , Taylor A. Kessinger , Boris I. Shraiman

We consider an infinitely-many neutral allelic model of population genetics where all alleles are divided into a finite number of classes, and each class is characterized by its own mutation rate. For this model the allelic composition of a…

概率论 · 数学 2026-05-07 Eugene Strahov

Evolutionary forces shape patterns of genetic diversity within populations and contribute to phenotypic variation. In particular, recurrent positive selection has attracted significant interest in both theoretical and empirical studies.…

种群与进化 · 定量生物学 2014-05-09 Lawrence H. Uricchio , Ryan D. Hernandez