相关论文: Robust reconstruction on trees is determined by th…

The mutational heterogeneity of tumours can be described with a tree representing the evolutionary history of the tumour. With noisy sequencing data there may be uncertainty in the inferred tree structure, while we may also wish to study…

We consider a pruning of the inhomogeneous continuum random trees, as well as the cut trees that encode the genealogies of the fragmentations that come with the pruning. We propose a new approach to the reconstruction problem, which has…

We consider stochastic processes on complete, locally compact tree-like metric spaces $(T,r)$ on their "natural scale" with boundedly finite speed measure $\nu$. Given a triple $(T,r,\nu)$ such a speed-$\nu$ motion on $(T,r)$ can be…

We study when geometric simplicity of decision boundaries, used here as a notion of interpretability, can conflict with accurate approximation of axis-aligned decision trees by shallow neural networks. Decision trees induce rule-based,…

In recent years, many network perturbation techniques, such as topological perturbations and service perturbations, were employed to study and improve the robustness of complex networks. However, there is no general way to evaluate the…

We present the first sub-quadratic time algorithm that with high probability correctly reconstructs phylogenetic trees for short sequences generated by a Markov model of evolution. Due to rapid expansion in sequence databases, such very…

A tree $\sigma$-spanner of a positively real-weighted $n$-vertex and $m$-edge undirected graph $G$ is a spanning tree $T$ of $G$ which approximately preserves (i.e., up to a multiplicative stretch factor $\sigma$) distances in $G$. Tree…

Let $G$ be a finite tree with root $r$ and associate to the internal vertices of $G$ a collection of transition probabilities for a simple nondegenerate Markov chain. Embedd $G$ into a graph $G^\prime$ constructed by gluing finite linear…

The function or performance of a network is strongly dependent on its robustness, quantifying the ability of the network to continue functioning under perturbations. While a wide variety of robustness metrics have been proposed, they have…

This paper is a variation on the uniform spanning tree theme. We use random spanning forests to solve the following problem: for a Markov process on a finite set of size $n$, find a probability law on the subsets of any given size $m \leq…

The sigma-irregularity index $\sigma(G) = \sum_{uv \in E(G)} (d_G(u) - d_G(v))^2$ measures the total degree imbalance along the edges of a graph. We study extremal problems for $\sigma(T)$ within the class of trees of fixed order $n$ and…

We study the asymptotic behavior of ``true" self-avoiding random walks on general infinite locally finite trees. In this model, the walk starts at the root and, at each step, from its current vertex chooses a neighboring edge to traverse…

Random forests construct each tree with a different, randomised representation of the feature space. Their uniform voting cannot correct errors in regions where trees with incorrect representations probabilistically outnumber correct ones,…

We destroy a finite tree of size $n$ by cutting its edges one after the other and in uniform random order. Informally, the associated cut-tree describes the genealogy of the connected components created by this destruction process. We…

In this paper, we aim to provide probabilistic and combinatorial insights into tree formulas for the Green function and hitting probabilities of Markov chains on a finite state space. These tree formulas are closely related to loop-erased…

Given natural limitations on the length DNA sequences, designing phylogenetic reconstruction methods which are reliable under limited information is a crucial endeavor. There have been two approaches to this problem: reconstructing partial…

We study a notion of robustness of a Markov kernel that describes a system of several input random variables and one output random variable. Robustness requires that the behaviour of the system does not change if one or several of the input…

We consider a time-homogeneous Markov chain $X_n$, $n\ge0$, valued in ${\bf R}$. Suppose that this chain is transient, that is, $X_n$ generates a $\sigma$-finite renewal measure. We prove the key renewal theorem under condition that this…

We investigate characteristics of random split trees introduced by Devroye; split trees include for example binary search trees, $m$-ary search trees, quadtrees, median of $(2k+1)$-trees, simplex trees, tries and digital search trees. More…

The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree…