相关论文: From tangle fractions to DNA
Data science offers a powerful tool to understand objects in multiple sciences. In this paper we utilize concept of data science, most notably topological data analysis, to extend our understanding of knot theory. This approach provides a…
We seek random versions of some classical theorems on complex approximation by polynomials and rational functions, as well as investigate properties of random compact sets in connection to complex approximation.
We study the space of real rational curves of low degree in the quadric of signature $(3,2)$ and provides a classificaton of real rational knots and nodal curves. Apart from the classification, we also study the relationship between the…
In this paper we treat some fractal and statistical features of the DNA sequences. First, a fractal record model of DNA sequence is proposed by mapping DNA sequences to integer sequences, followed by R/S analysis of the model and…
We demonstrate the versatility of the tangle-tree duality theorem for abstract separation systems by using it to prove tree-of-tangles theorems. This approach allows us to strengthen some of the existing tree-of-tangles theorems by bounding…
A stretched DNA molecule which is also under- or overwound, undergoes a buckling transition forming intertwined looped domains called plectonemes. Here we develop a simple theory that extends the two-phase model of stretched supercoiled…
In the present paper, we build a bridge between Conway-Coxeter friezes and rational tangles through the Kauffman bracket polynomials. One can compute a Kauffman bracket polynomials attached to rational links by using Conway-Coxeter friezes.…
A transversal topic of my research has been the development and application of computational methods for DNA sequence analysis. The methods I have been developing aim at improving our understanding of the regulation processes happening in…
We refine the combinatorial 1-cocycle $\mathbb{L}R_{reg}$ for regular isotopies of long knots to a 1-cocycle with values in the free $\mathbb{Z}[x,x^{-1}]$-module generated by regular isotopy classes of oriented tangles with exactly one…
We consider the ways in which a 4-tangle T inside a unit cube can be extended outside the cube into a knot or link L. We present two links n(T) and d(T) such that the greatest common divisor of the determinants of these two links always…
Neural networks (NNs) are pervasive across various domains but often lack interpretability. To address the growing need for explanations, logic-based approaches have been proposed to explain predictions made by NNs, offering correctness…
Let $S$ be a rational fraction and let $f$ be a polynomial over a finite field. Consider the transform $T(f)=\operatorname{numerator}(f(S))$. In certain cases, the polynomials $f$, $T(f)$, $T(T(f))\dots$ are all irreducible. For instance,…
The Links-Quivers Correspondence predicts that all the symmetric (or antisymmetric) colored HOMFLY-PT polynomials of a link can be recovered from a finite amount of data (a quiver) associated to the link. We give a new geometric proof of…
Arborescent knots are the ones which can be represented in terms of double fat graphs or equivalently as tree Feynman diagrams. This is the class of knots for which the present knowledge is enough for lifting topological description to the…
We introduce an algebraic structure we call semiquandles whose axioms are derived from flat Reidemeister moves. Finite semiquandles have associated counting invariants and enhanced invariants defined for flat virtual knots and links. We…
The fundamental quandle is a complete invariant for unoriented tame knots \cite{JO, Ma} and non-split links \cite{FR}. The proof involves proving a relationship between the components of the fundamental quandle and the cosets of the…
The formation of DNA loops by proteins and protein complexes is ubiquitous to many fundamental cellular processes, including transcription, recombination, and replication. Here we review recent advances in understanding the properties of…
In this short survey we review recent results dealing with algebraic structures (quandles, psyquandles, and singquandles) related to singular knot theory. We first explore the singquandles counting invariant and then consider several recent…
We introduce a 4-dimensional analogue of the rational Seifert genus of a knot $K\subset Y$, which we call the rational slice genus, that measures the complexity of a homology class in $H_2(Y\times [0,1],K;\mathbb{Q})$. Our main theorem is a…
Many kinds of data are naturally amenable to being treated as sequences. An example is text data, where a text may be seen as a sequence of words. Another example is clickstream data, where a data instance is a sequence of clicks made by a…