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We present initial results regarding the existence, stability and interaction of linear and nonlinear vibrational modes in a system of two coupled, one dimensional lattices with unequal numbers of masses. The effects on these nonlinear…

生物物理 · 物理学 2007-05-23 Kyle Forinash

Cell motility is one of the most fundamental phenomena underlying biological processes that maintain living organisms alive. Here we introduce a simple model to describe the motility of cells which include not only time-correlated internal…

生物物理 · 物理学 2022-07-13 T. N. Azevedo , L. G. Rizzi

Modal methods are a long-standing approach to physical modelling synthesis. Extensions to nonlinear problems are possible, leading to coupled nonlinear systems of ordinary differential equations. Recent work in scalar auxiliary variable…

声音 · 计算机科学 2026-03-17 Victor Zheleznov , Stefan Bilbao , Alec Wright , Simon King

Using electromagnetism to study analogue space-times is tantamount to considering consistency conditions for when a given (meta-)material would provide an analogue space-time model or --- vice versa --- characterizing which given metric…

广义相对论与量子宇宙学 · 物理学 2017-12-27 Sebastian Schuster , Matt Visser

Cell-cell adhesion plays a vital role in the development and maintenance of multicellular organisms. One of its functions is regulation of cell migration, such as occurs, e.g. during embryogenesis or in cancer. In this work, we develop a…

组织与器官 · 定量生物学 2024-03-08 Anna Zhigun , Mabel Lizzy Rajendran

Building upon recent developments of force-based estimators with a reduced variance for the computation of densities, radial distribution functions or local transport properties from molecular simulations, we show that the variance can be…

化学物理 · 物理学 2021-05-18 Samuel W. Coles , Etienne Mangaud , Daan Frenkel , Benjamin Rotenberg

We investigate the dynamics of a single deformable self-propelled particle which undergoes a spinning motion in a two-dimensional space. Equations of motion are derived from the symmetry argument for three kinds of variables. One is a…

软凝聚态物质 · 物理学 2013-07-09 Mitsusuke Tarama , Takao Ohta

This study develops an equation for describing three-dimensional membrane transformation through proliferation of its component cells regulated by morphogen density distributions on the membrane. The equation is developed in a…

其他定量生物学 · 定量生物学 2016-05-09 Hiroshi C. Ito

We derive a hydrodynamic description of metric-free active matter: starting from self-propelled particles aligning with neighbors defined by "topological" rules, not metric zones, -a situation advocated recently to be relevant for bird…

软凝聚态物质 · 物理学 2015-06-04 Anton Peshkov , Sandrine Ngo , Eric Bertin , Hugues Chaté , Francesco Ginelli

The initiation of directional cell motion requires symmetry breaking that can happen both with or without external stimuli. During cell crawling, forces generated by the cytoskeleton and their transmission through mechanosensitive adhesions…

细胞行为 · 定量生物学 2023-06-02 Yuzhu Chen , David Saintillan , Padmini Rangamani

Perturbative treatments of the lattice dynamics are widely successful for many crystalline materials, their applicability is, however, limited for strongly anharmonic systems, metastable crystal structures and liquids. The full dynamics of…

材料科学 · 物理学 2023-10-10 Erik Fransson , Mattias Slabanja , Paul Erhart , Göran Wahnström

A number of factors, such as, cell-cell interactions and self-propulsion of cells driven by cytoskeletal forces determine tissue morphologies and dynamics. To explore the interplay between these factors in controlling the dynamics at the…

软凝聚态物质 · 物理学 2025-05-12 Rajsekhar Das , Xin Li , Sumit Sinha , D. Thirumalai

Previous work introduced a lower-dimensional numerical model for the geometric nonlinear simulation and optimization of compliant pressure actuated cellular structures. This model takes into account hinge eccentricities as well as…

定量方法 · 定量生物学 2017-07-31 Markus Pagitz , Remco I. Leine

In this work, a mathematical model of self-oscillatory dynamics of the metabolism in a cell is studied. The full phase-parametric characteristics of variations of the form of attractors depending on the dissipation of a kinetic membrane…

适应与自组织系统 · 物理学 2018-01-17 V. I. Grytsay , I. V. Musatenko

In this paper we present the results of a large-scale numerical investigation of structural properties of a model of cell membrane, simulated as a bilayer of flexible molecules in vacuum. The study was performed by carrying out extensive…

生物物理 · 物理学 2009-11-07 G. La Penna , S. Letardi , V. Minicozzi , S. Morante , G. C. Rossi , G. Salina

We introduce a new dynamical system, at the interface between second-order dynamics with inertia and Newton's method. This system extends the class of inertial Newton-like dynamics by featuring a time-dependent parameter in front of the…

最优化与控制 · 数学 2024-02-13 Camille Castera , Hedy Attouch , Jalal Fadili , Peter Ochs

This paper proposes a variable metric splitting algorithm to solve the electrical behavior of neuromorphic circuits made of capacitors, memristive elements, and batteries. The gradient property of the memristive elements is exploited to…

系统与控制 · 电气工程与系统科学 2025-04-10 Amir Shahhosseini , Thomas Burger , Rodolphe Sepulchre

In this work, we simulate the electron dynamics in molecular systems with the Time-Dependent Density Matrix Renormalization Group (TD-DMRG) algorithm. We leverage the generality of the so-called tangent-space TD-DMRG formulation and design…

化学物理 · 物理学 2021-06-08 Alberto Baiardi

We consider a sequence of matrices that are associated to Markov dynamical systems and use determinant-free linear algebra techniques (as well as some algebra and complex analysis) to rigorously estimate the eigenvalues of every matrix…

动力系统 · 数学 2020-01-22 Joseph Horan

Abstractions of dynamical systems enable their verification and the design of feedback controllers using simpler, usually discrete, models. In this paper, we propose a data-driven abstraction mechanism based on a novel metric between Markov…

系统与控制 · 电气工程与系统科学 2024-05-15 Adrien Banse , Licio Romao , Alessandro Abate , Raphaël M. Jungers