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The hopping motion of classical particles on a chain coupled to reservoirs at both ends is studied for parallel dynamics with arbitrary probabilities. The stationary state is obtained in the form of an alternating matrix product. The…

凝聚态物理 · 物理学 2009-10-28 A. Honecker , I. Peschel

We study the stochastic motion of active particles that undergo spontaneous transitions between two distinct modes of motion. Each mode is characterized by a velocity distribution and an arbitrary (anti-)persistence. We present an…

统计力学 · 物理学 2023-07-07 M. Reza Shaebani , Heiko Rieger , Zeinab Sadjadi

We show how one can measure the signal from slow jumps of a single molecule between metastable positions using a setup where the molecule is fixed to one lead, and one of the coupling strengths is controlled externally. Such a measurement…

介观与纳米尺度物理 · 物理学 2013-04-04 Tero T. Heikkila , Wolfgang Belzig

We provide a generic scheme to separate the particles of a mixture by their physical properties like mass, friction or size. The scheme employs a periodically shaken two dimensional dissipative lattice and hinges on a simultaneous transport…

混沌动力学 · 物理学 2018-05-30 Aritra K. Mukhopadhyay , Benno Liebchen , Peter Schmelcher

Periodic one dimensional hopping model is useful to study the motion of microscopic particles, which lie in thermal noise environment. The mean velocity $V_N$ and diffusion constant $D_N$ of this model have been obtained by Bernard Derrida…

统计力学 · 物理学 2011-05-06 Yunxin Zhang

Using molecular dynamics simulations we study the slow dynamics of a hard sphere fluid confined in a disordered porous matrix. The presence of both discontinuous and continuous glass transitions as well as the complex interplay between…

软凝聚态物质 · 物理学 2009-09-29 Jan Kurzidim , Daniele Coslovich , Gerhard Kahl

Molecular search phenomena are observed in a variety of chemical and biological systems. During the search the participating particles frequently move in complex inhomogeneous environments with random transitions between different dynamic…

统计力学 · 物理学 2018-11-13 Jaeoh Shin , Anatoly B. Kolomeisky

We develop an general formalism of single enzyme kinetics in two dimension where substrates diffuse stochastically on a square lattice in presence of disorder. The dynamics of the model could be decoupled effectively to two stochastic…

化学物理 · 物理学 2009-01-20 Mahashweta Basu , P. K. Mohanty

We study travelling waves on a two--dimensional lattice with linear and nonlinear coupling between nearest particles and a periodic nonlinear substrate potential. Such a discrete system can model molecules adsorbed on a substrate crystal…

斑图形成与孤子 · 物理学 2007-05-23 Michal Feckan , Vassilis M. Rothos

Transport of molecular motors, stimulated by interactions with specific links between consecutive binding sites (called ``bridges''), is investigated theoretically by analyzing discrete-state stochastic ``burnt-bridge'' models. When an…

软凝聚态物质 · 物理学 2015-06-25 Alexander Yu. Morozov , Ekaterina Pronina , Anatoly B. Kolomeisky , Maxim N. Artyomov

Dynamic properties of molecular motors that fuel their motion by actively interacting with underlying molecular tracks are studied theoretically via discrete-state stochastic ``burnt-bridge'' models. The transport of the particles is viewed…

软凝聚态物质 · 物理学 2009-11-13 Maxim N. Artyomov , Alexander Yu. Morozov , Ekaterina Pronina , Anatoly B. Kolomeisky

Extending the famous Model B for the time evolution of a liquid mixture, we derive an approximate expression for the mobility matrix that couples the different mixture components. This approach is based on a single component fluid with…

统计力学 · 物理学 2023-06-21 Maryam Akaberian , Filipe C Thewes , Peter Sollich , Matthias Krüger

We investigate path-wise observables in experiments on driven colloids in a periodic light field to dissect selected intricate transport features, kinetics, and transition-path time statistics out of thermodynamic equilibrium. These…

Electronic transport properties for single-molecule junctions have been widely measured by several techniques, including mechanically controllable break junctions, electromigration break junctions or by means of scanning tunneling…

介观与纳米尺度物理 · 物理学 2020-07-22 Ferdinand Evers , Richard Korytár , Sumit Tewari , Jan M. van Ruitenbeek

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

统计力学 · 物理学 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

Stochastic models of reaction-diffusion systems are important for the study of biochemical reaction networks where species are present in low copy numbers or if reactions are highly diffusion limited. In living cells many such systems…

数值分析 · 数学 2015-06-15 Stefan Hellander

Motor-driven intracellular transport of organelles, vesicles, and other molecular cargo is a highly collective process. An individual cargo is often pulled by a team of transport motors, with numbers ranging from only a few to several…

统计力学 · 物理学 2022-01-06 Matthew P. Leighton , David A. Sivak

Kinetic equations for the stationary state distribution function of ions moving through narrow pores are solved for a number of one-dimensional models of single ion transport. Ions move through pores of length $L$, under the action of a…

软凝聚态物质 · 物理学 2009-11-10 Jaroslaw Piasecki , Rosalind J. Allen , Jean-Pierre Hansen

We investigate a driven two-channel system where particles on different lanes mutually obstruct each others motion extending an earlier model by Popkov and Peschel [1]. This obstruction may occur in biological contexts due to steric…

生物物理 · 物理学 2015-03-13 Anna Melbinger , Tobias Reichenbach , Thomas Franosch , Erwin Frey

Many transport processes in nature take place on substrates, often considered as unidimensional lanes. These unidimensional substrates are typically non-static: affected by a fluctuating environment, they can undergo conformational changes.…

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