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The transport of particles in cells is influenced by the properties of intracellular networks they traverse while searching for localized target regions or reaction partners. Moreover, given the rapid turnover in many intracellular…

In this paper a lattice model for the diffusional transport of particles in the interphase cell nucleus is proposed. The dynamic behaviour of single chains on the lattice is investigated and Rouse scaling is verified. Dynamical dense…

生物物理 · 物理学 2015-05-13 Annika Wedemeier , Holger Merlitz , Chen-Xu Wu , Jörg Langowski

We consider singularly perturbed convection-diffusion equations on one-dimensional networks (metric graphs) as well as the transport problems arising in the vanishing diffusion limit. Suitable coupling condition at inner vertices are…

偏微分方程分析 · 数学 2020-04-22 Herbert Egger , Nora Philippi

Particle transport through an open, discrete 1-D channel against a mechanical or chemical bias is analyzed within a master equation approach. The channel, externally driven by time dependent site energies, allows multiple occupation due to…

统计力学 · 物理学 2015-05-18 Mario Einax , Gemma Solomon , Wolfgang Dieterich , Abraham Nitzan

Porous and heterogeneous materials are found in many applications from composites, membranes, chemical reactors, and other engineered materials to biological matter and natural subsurface structures. In this work we propose an integrated…

计算物理 · 物理学 2019-09-15 Gianluca Boccardo , Eleonora Crevacore , Alberto Passalacqua , Matteo Icardi

In this paper a lattice model for diffusional transport of particles in the interphase cell nucleus is proposed. Dense networks of chromatin fibers are created by three different methods: randomly distributed, non-interconnected obstacles,…

生物物理 · 物理学 2009-11-13 Annika Wedemeier , Holger Merlitz , Chen-Xu Wu , Jörg Langowski

Time plays an essential role in the diffusion of information, influence and disease over networks. In many cases we only observe when a node copies information, makes a decision or becomes infected -- but the connectivity, transmission…

社会与信息网络 · 计算机科学 2011-05-05 Manuel Gomez Rodriguez , David Balduzzi , Bernhard Schölkopf

We introduce a model for active transport on inhomogeneous networks embedded in a diffusive environment and investigate the formation of particle clusters. In the presence of a hard-core interaction, cluster sizes exhibit an algebraically…

生物物理 · 物理学 2015-03-13 Philip Greulich , Ludger Santen

Consider a network embedded in the 2D plane, where a particle diffuses along the edges of the network. It is clear that over short length scales a particle moves along a single edge and thus undergoes one-dimensional diffusion. However, on…

统计力学 · 物理学 2021-08-23 D. B. Wilson , C. H. L. Beentjes

We discuss transport equations resulting from relativistic diffusions in the proper time. We show that a solution of the transport equation can be obtained from the solution of the diffusion equation by means of an integration over the…

高能物理 - 理论 · 物理学 2009-11-19 Z. Haba

We study particle transport in a class of open channels of finite length, made of identical cells of connected open polygonal billiards with parallel boundaries. In these systems the Mean Square Displacement (MSD) grows in time faster than…

统计力学 · 物理学 2025-03-20 Luisana Claudio-Pachecano , Hernán Larralde , Carlos Mejía-Monasterio

A novel mechanism for the transport of microscale particles in viscous fluids is demonstrated. The mechanism exploits the trapping of such particles by rotational streaming cells established in the vicinity of an oscillating cylinder,…

流体动力学 · 物理学 2016-01-13 Kwitae Chong , Scott D. Kelly , Stuart T. Smith , Jeff D. Eldredge

This paper deals with simulation of flow and transport in porous media such as transport of groundwater contaminants. We first discuss how macro scale equations are derived and which terms have to be closed by models. The transport of…

We examine the transport behaviour of non-interacting particles in a simple channel billiard, at equilibrium and in the presence of an external field. The channel walls are constructed from straight line-segments. We observe a sensitive…

统计力学 · 物理学 2007-05-23 O. G. Jepps , L. Rondoni

Monte Carlo (MC) simulations of transport in random porous networks indicate that for high variances of the log-normal permeability distribution, the transport of a passive tracer is non-Fickian. Here we model this non-Fickian dispersion in…

计算物理 · 物理学 2018-08-01 Amir H. Delgoshaie , Patrick Jenny , Hamdi A. Tchelepi

The linear transport theory is developed to describe the time dependence of the number density of tracer particles in porous media. The advection is taken into account. The transport equation is numerically solved by the analytical discrete…

计算物理 · 物理学 2020-05-26 Kenji Amagai , Yuko Hatano , Manabu Machida

Due to network operation and maintenance relying heavily on network traffic monitoring, traffic matrix analysis has been one of the most crucial issues for network management related tasks. However, it is challenging to reliably obtain the…

网络与互联网体系结构 · 计算机科学 2024-12-02 Xinyu Yuan , Yan Qiao , Zhenchun Wei , Zeyu Zhang , Minyue Li , Pei Zhao , Rongyao Hu , Wenjing Li

The diffusive transport of biased Brownian particles in a two-dimensional symmetric channel is investigated numerically considering both the no-flow and the reflection boundary conditions at the channel boundaries. Here, the geometrical…

软凝聚态物质 · 物理学 2019-09-10 Narender Khatri , P. S. Burada

The diffusion of particles trapped in long narrow channels occurs predominantly in one dimension. Here, molecular dynamics simulation is used to study the inertial dynamics of two-dimensional hard disks, confined to long, narrow,…

软凝聚态物质 · 物理学 2020-02-05 Mahdi Zarif , Richard K. Bowles

Many transport processes on networks depend crucially on the underlying network geometry, although the exact relationship between the structure of the network and the properties of transport processes remain elusive. In this paper we…

物理与社会 · 物理学 2015-06-26 Bosiljka Tadic , G. J. Rodgers , Stefan Thurner
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