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The presence of temporal correlations in random movement trajectories is a widespread phenomenon across biological, chemical and physical systems. The ubiquity of persistent and anti-persistent motion in many natural and synthetic systems…

统计力学 · 物理学 2024-07-03 Daniel Marris , Luca Giuggioli

We study the influence of filament elasticity on the motion of collective molecular motors. It is found that for a backbone flexibility exceeding a characteristic value (motor stiffness divided through the mean displacement between attached…

软凝聚态物质 · 物理学 2007-05-23 Andrej Vilfan , Erwin Frey , Franz Schwabl

Cytoskeletal networks are the main actuators of cellular mechanics, and a foundational example for active matter physics. In cytoskeletal networks, motion is generated on small scales by filaments that push and pull on each other via…

软凝聚态物质 · 物理学 2022-10-05 Sebastian Fürthauer , Michael J. Shelley

Long, elastic filaments cross-linked and deformed by active molecular motors occur in various natural settings. The overall macroscopic mechanical response of such a composite network depends on the coupling between the active and the…

生物物理 · 物理学 2015-01-13 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan

We theoretically study the transport properties of self-propelled particles on complex structures, such as motor proteins on filament networks. A general master equation formalism is developed to investigate the persistent motion of…

软凝聚态物质 · 物理学 2014-09-19 M. Reza Shaebani , Zeinab Sadjadi , Igor M. Sokolov , Heiko Rieger , Ludger Santen

Many biological processes involve the action of molecular motors that interact with the cell cytoskeleton. Some processes, such as the transport of cargoes is achieved mainly by the action of individual motors. Other, such as cell motility…

生物物理 · 物理学 2011-03-25 Oded Farago , Anne Bernheim-Groswasser

The dynamics of molecular motors which occasionally detach from a heterogeneous track like DNA or RNA is considered. Motivated by recent single molecule experiments, we study a simple model for a motor moving along a disordered track using…

统计力学 · 物理学 2009-11-10 Yariv Kafri , David K. Lubensky , David R. Nelson

We introduce a model of a quantum walk on a graph in which a particle jumps between neighboring nodes and interacts with independent spins sitting on the edges. Entanglement propagates with the walker. We apply this model to the case of a…

量子物理 · 物理学 2021-03-30 Kevissen Sellapillay , Alberto D. Verga

In this article we examine the dynamics of a colloidal particle driven by a modulated force over a sinusoidal optical potential energy landscape. Coupling between the competing frequencies of the modulated drive and that of particle motion…

The spatial localization or sequestering of motile cargo and their dispersal within cells is an important process in a number of physiological contexts. The morphology of the cytoskeletal network, along which active, motor-driven…

生物物理 · 物理学 2019-07-16 Bryan Maelfeyt , Ajay Gopinathan

Dynamic properties of molecular motors whose motion is powered by interactions with specific lattice bonds are studied theoretically with the help of discrete-state stochastic "burnt-bridge" models. Molecular motors are depicted as random…

统计力学 · 物理学 2009-11-24 Maxim N. Artyomov , Alexander Yu. Morozov , Anatoly B. Kolomeisky

Flexible filaments moving in viscous fluids are ubiquitous in the natural microscopic world. For example, the swimming of bacteria and spermatozoa as well as important physiological functions at organ-level, such as the cilia-induced motion…

软凝聚态物质 · 物理学 2019-06-05 Panayiota Katsamba , Eric Lauga

Many cell functions are accomplished thanks to intracellular transport mechanisms of macromolecules along filaments. Molecular motors such as dynein or kinesin are proteins playing a primary role in these processes. The behavior of such…

混沌动力学 · 物理学 2010-12-21 Donatello Materassi , Subhrajit Roychowdhury , Murti V. Salapaka

We introduce a multi-species lattice gas model for motor protein driven collective cargo transport on cellular filaments. We use this model to describe and analyze the collective motion of interacting vesicle cargoes being carried by…

统计力学 · 物理学 2010-09-10 Sudipto Muhuri , Ignacio Pagonabarraga

We introduce a stochastic lattice gas model including two particle species and two parallel lanes. One lane with exclusion interaction and directed motion and the other lane without exclusion and unbiased diffusion, mimicking a micotubule…

统计力学 · 物理学 2009-11-13 M. Ebbinghaus , L. Santen

Coordinated cilia are used throughout the natural world for micronscale fluid transport. They are often modelled with regular filament arrays on fixed, planar surfaces. Here, we simulate hundreds of interacting active filaments on spherical…

流体动力学 · 物理学 2021-12-01 Timothy A Westwood , Eric E Keaveny

The transportation of the cargoes in biological cells is primarily driven by the motor proteins on filamentous protein tracks. The stochastic nature of the motion of motor protein often leads to its spontaneous detachment from the track.…

亚细胞过程 · 定量生物学 2018-11-29 Mohd Suhail Rizvi

Living matter moves, deforms, and organizes itself. In cells this is made possible by networks of polymer filaments and crosslinking molecules that connect filaments to each other and that act as motors to do mechanical work on the network.…

软凝聚态物质 · 物理学 2020-12-15 Sebastian Fürthauer , Daniel J Needleman , Michael J. Shelley

We investigate the tagged-particle motion in a strongly interacting quasi-confined liquid using periodic boundary conditions along the confining direction. Within a mode-coupling theory of the glass transition (MCT) we calculate the…

软凝聚态物质 · 物理学 2021-09-14 Lukas Schrack , Charlotte F. Petersen , Michele Caraglio , Gerhard Jung , Thomas Franosch

The internal motions of biomatter immersed in biofluid are investigated. The interactions between the fragments of biomatter and its surrounding biofluid are modeled using field theory. In the model, the biomatter is coupled to the gauge…

生物物理 · 物理学 2012-05-07 A. Sulaiman , L. T. Handoko