相关论文: Constructing and exploring wells of energy landsca…
Random walks on multidimensional nonlinear landscapes are of interest in many areas of science and engineering. In particular, properties of adaptive trajectories on fitness landscapes determine population fates and thus play a central role…
We present a statistical method for complex energy landscape exploration which provides information on the metastable states--or valleys--actually explored by an unperturbed aging process following a quench. Energy fluctuations of record…
Topological data analysis provides a multiscale description of the geometry and topology of quantitative data. The persistence landscape is a topological summary that can be easily combined with tools from statistics and machine learning.…
The tempo and mode of an adaptive process is strongly determined by the structure of the fitness landscape that underlies it. In order to be able to predict evolutionary outcomes (even on the short term), we must know more about the nature…
The aging dynamics of a simple model glass is numerically investigated observing how it takes place in the potential energy landscape $V$. Partitioning the landscape in basins of minima of $|\nabla V|^2$, we are able to elucidate some…
A central goal of protein-folding theory is to predict the stochastic dynamics of transition paths --- the rare trajectories that transit between the folded and unfolded ensembles --- using only thermodynamic information, such as a…
The hierarchy of channel networks in landscapes displays features that are characteristic of non-equilibrium complex systems. Here we show that a sequence of increasingly complex ridge and valley networks is produced by a system of partial…
These notes introduce probabilistic landscape models defined on high-dimensional discrete sequence spaces. The models are motivated primarily by fitness landscapes in evolutionary biology, but links to statistical physics and computer…
We develop a landscape-flux framework to investigate observed frequency distributions of vegetation and the stability of these ecological systems under fluctuations. The frequency distributions can characterize the population-potential…
Energy landscapes play a crucial role in shaping dynamics of many real-world complex systems. System evolution is often modeled as particles moving on a landscape under the combined effect of energy-driven drift and noise-induced diffusion,…
Geometrical properties of landscapes result from the geological processes that have acted through time. The quantitative analysis of natural relief represents an objective form of aiding in the visual interpretation of landscapes, as…
Exploratory Landscape Analysis is a powerful technique for numerically characterizing landscapes of single-objective continuous optimization problems. Landscape insights are crucial both for problem understanding as well as for assessing…
Biological evolution can be conceptualized as a search process in the space of gene sequences guided by the fitness landscape, a mapping that assigns a measure of reproductive value to each genotype. Here we discuss probabilistic models of…
Hard-sphere models exhibit many of the same kinds of supercooled-liquid behavior as more realistic models of liquids, but the highly non-analytic character of their potentials makes it a challenge to think of that behavior in…
Exploratory landscape analysis and fitness landscape analysis in general have been pivotal in facilitating problem understanding, algorithm design and endeavors such as automated algorithm selection and configuration. These techniques have…
The word "valley" is a popular term used in intuitively describing fitness landscapes. What is a valley on a fitness landscape? How to identify the direction and location of a valley if it exists? However, such questions are seldom…
One of the most common problem-solving heuristics is by analogy. For a given problem, a solver can be viewed as a strategic walk on its fitness landscape. Thus if a solver works for one problem instance, we expect it will also be effective…
The framework Topology of Sustainable Management by Heitzig et al. (2016) distinguishes qualitatively different regions in state space of dynamical models representing manageable systems with default dynamics. In this paper, we connect the…
Describing the complex landscape of infinite-dimensional free energy is generally a challenging problem. This difficulty arises from the existence of numerous minimizers and, consequently, a vast number of saddle points. These factors make…
Landscapes evolve toward surfaces with complex networks of channels and ridges in response to climatic and tectonic forcing. Here we analyze variational principles giving rise to minimalist models of landscape evolution as a system of…