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We estimate density of defects frozen into a biological Turing pattern which was turned on at a finite rate. A self-locking of gene expression in individual cells, which makes the Turing transition discontinuous, stabilizes the pattern…

生物物理 · 物理学 2007-05-23 Jacek Dziarmaga

Complex systems with global interactions tend to be stable if interactions between components are sufficiently homogeneous. In biological systems, which often have small copy numbers and interactions mediated by diffusing agents, noise and…

生物物理 · 物理学 2023-04-14 Fabrizio Olmeda , Steffen Rulands

From a mathematical point of view self-organization can be described as patterns to which certain dynamical systems modeling social dynamics tend spontaneously to be attracted. In this paper we explore situations beyond self-organization,…

最优化与控制 · 数学 2014-03-24 Marco Caponigro , Massimo Fornasier , Benedetto Piccoli , Emmanuel Trélat

Understanding the pattern formation in communities has been at the center of attention in various fields. Here we introduce a novel model, called an "information-particle model," which is based on the reaction-diffusion model and the…

物理与社会 · 物理学 2023-07-21 Junichi Miyakoshi

Several mechanisms have been proposed to explain the spontaneous generation of self-organized patterns, hypothesised to play a role in the formation of many of the magnificent patterns observed in Nature. In several cases of interest, the…

斑图形成与孤子 · 物理学 2025-10-22 Riccardo Muolo , Malbor Asllani , Duccio Fanelli , Philip K. Maini , Timoteo Carletti

The effect of external fluctuations on the formation of spatial patterns is analysed by means of a stochastic Swift-Hohenberg model with multiplicative space-correlated noise. Numerical simulations in two dimensions show a shift of the…

凝聚态物理 · 物理学 2009-10-28 J. Garcia-Ojalvo , J. M. Sancho

Stochasticity (or noise) at cellular and molecular levels has been observed extensively as a universal feature for living systems. However, how living systems deal with noise while performing desirable biological functions remains a major…

分子网络 · 定量生物学 2020-01-22 Qing Nie , Lingxia Qiao , Yuchi Qiu , Lei Zhang , Wei Zhao

We extend the mechanism for noise-induced phase transitions proposed by Ibanes et al. [Phys. Rev. Lett. 87, 020601-1 (2001)] to pattern formation phenomena. In contrast with known mechanisms for pure noise-induced pattern formation, this…

统计力学 · 物理学 2009-11-07 J. Buceta , M. Ibanes , J. M. Sancho , Katja Lindenberg

Many existing studies on pattern formation in the reaction-diffusion systems rely on deterministic models. However, environmental noise is often a major factor which leads to significant changes in the spatiotemporal dynamics. In this…

种群与进化 · 定量生物学 2015-09-30 Anuj Kumar Sirohi , Malay Banerjee , Anirban Chakraborti

Models of diffusion driven pattern formation that rely on the Turing mechanism are utilized in many areas of science. However, many such models suffer from the defect of requiring fine tuning of parameters or an unrealistic separation of…

其他定量生物学 · 定量生物学 2015-03-17 Thomas Butler , Nigel Goldenfeld

We study nano-pattern formation in a stochastic model for adsorption-desorption processes with interacting adsorbate and hyperbolic transport caused by memory effects. It is shown that at early stages the system manifests pattern selection…

统计力学 · 物理学 2015-03-17 Dmitrii O. Kharchenko , Vasyl O. Kharchenko , Sergei V. Kokhan

Chemical, physical and ecological systems passing through a saddle-node bifurcation will, momentarily, find themselves balanced at a semi-stable steady state. If perturbed by noise, such systems will escape from the zero-steady state, with…

统计力学 · 物理学 2020-01-08 Alastair Jamieson-Lane , Eric N. Cytrynbaum

Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

组织与器官 · 定量生物学 2019-02-14 Melinda Liu Perkins , Murat Arcak

Elucidating the neurophysiological mechanisms underlying neural pattern formation remains an outstanding challenge in Computational Neuroscience. In this paper, we address the issue of understanding the emergence of neural patterns by…

神经元与认知 · 定量生物学 2024-06-04 Gregory Dumont , Carmen Oana Tarniceriu

Polyhomeostatic adaption occurs when evolving systems try to achieve a target distribution function for certain dynamical parameters, a generalization of the notion of homeostasis. Here we consider a single rate encoding leaky integrator…

适应与自组织系统 · 物理学 2013-07-15 Mathias Linkerhand , Claudius Gros

We explore the joint effect of the intrinsic noise and time delay on the spatial pattern formation within a multi-scale mobile lattice model of the epithelium. The protein fluctuations are driven by transcription/translation processes in…

适应与自组织系统 · 物理学 2015-06-12 Dmitry Bratsun , Andrey Zakharov

An important characteristic of flocks of birds, school of fish, and many similar assemblies of self-propelled particles is the emergence of states of collective order in which the particles move in the same direction. When noise is added…

统计力学 · 物理学 2015-01-19 M. Aldana , V. Dossetti , C. Huepe , V. M. Kenkre , H. Larralde

Spontaneous pattern formation in homogeneous systems is ubiquitous in nature. Although Turing demonstrated that spatial patterns can emerge in reaction-diffusion (RD) systems when the homogeneous state becomes linearly unstable, it remains…

生物物理 · 物理学 2024-08-20 Shuonan Wu , Bing Yu , Yuhai Tu , Lei Zhang

The problem of pattern formation in a generic two species reaction--diffusion model is studied, under the hypothesis that only one species can diffuse. For such a system, the classical Turing instability cannot take place. At variance, by…

统计力学 · 物理学 2013-09-16 Laura Cantini , Claudia Cianci , Duccio Fanelli , Emma Massi , Luigi Barletti

A stochastic version of the Brusselator model is proposed and studied via the system size expansion. The mean-field equations are derived and shown to yield to organized Turing patterns within a specific parameters region. When determining…

统计力学 · 物理学 2015-05-14 Tommaso Biancalani , Duccio Fanelli , Francesca Di Patti