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Localized patterns are coherent structures embedded in a quiescent state and occur in both discrete and continuous media across a wide range of applications. While it is well-understood how domain covering patterns (for example stripes and…

斑图形成与孤子 · 物理学 2025-03-19 Jason J. Bramburger , Dan J. Hill , David J. B. Lloyd

This work introduces a neural architecture for learning forward models of stochastic environments. The task is achieved solely through learning from temporal unstructured observations in the form of images. Once trained, the model allows…

机器学习 · 计算机科学 2021-12-16 Marian Andrecki , Nicholas K. Taylor

Biological systems are majorly dependent on their property of bistability in order to exhibit nongenetic heterogeneity in terms of cellular morphology and physiology. Spatial patterns of phenotypically heterogeneous cells, arising due to…

定量方法 · 定量生物学 2023-01-25 Priya Chakraborty , Ushasi Roy , Mohit K. Jolly , Sayantari Ghosh

Motivated by bacterial chemotaxis and multi-species ecological interactions in heterogeneous environments, we study a general one-dimensional reaction-cross-diffusion system in the presence of spatial heterogeneity in both transport and…

斑图形成与孤子 · 物理学 2023-03-08 Eamonn A. Gaffney , Andrew L. Krause , Philip K. Maini , Chenyuan Wang

A model for autonomous feedback control of particle transport through a large number of channels is introduced. Interactions among the particles can lead to a strong suppression of fluctuations in the particle number statistics. Within a…

统计力学 · 物理学 2016-02-25 Tobias Brandes

We identify a mechanism for biological spatial pattern formation arising when the signals that mediate interactions between individuals in a population have pulsed character. Our general population-signal framework shows that while for a…

种群与进化 · 定量生物学 2023-08-15 Eduardo H. Colombo , Cristóbal López , Emilio Hernández-García

Dynamic patterning of specific proteins is essential for the spatiotemporal regulation of many important intracellular processes in procaryotes, eucaryotes, and multicellular organisms. The emergence of patterns generated by interactions of…

生物物理 · 物理学 2018-05-11 Jacob Halatek , Fridtjof Brauns , Erwin Frey

We propose a model of parameter learning for signal transduction, where the objective function is defined by signal transmission efficiency. We apply this to learn kinetic rates as a form of evolutionary learning, and look for parameters…

分子网络 · 定量生物学 2014-08-12 Gabriele Scheler

Temporal data such as time series can be viewed as discretized measurements of the underlying function. To build a generative model for such data we have to model the stochastic process that governs it. We propose a solution by defining the…

机器学习 · 计算机科学 2023-05-22 Marin Biloš , Kashif Rasul , Anderson Schneider , Yuriy Nevmyvaka , Stephan Günnemann

We combine conditional state density construction with an extension of the Scenario Approach for stochastic Model Predictive Control to nonlinear systems to yield a novel particle-based formulation of stochastic nonlinear output-feedback…

最优化与控制 · 数学 2020-05-01 Martin A. Sehr , Robert R. Bitmead

We study how to safely control nonlinear control-affine systems that are corrupted with bounded non-stochastic noise, i.e., noise that is unknown a priori and that is not necessarily governed by a stochastic model. We focus on safety…

系统与控制 · 电气工程与系统科学 2024-12-11 Hongyu Zhou , Yichen Song , Vasileios Tzoumas

A diffusion-type coupling operator biologically significant in neuroscience is a difference of Gaussian functions (Mexican Hat operator) used as a spatial-convolution kernel. We are interested in pattern formation by \emph{stochastic}…

神经元与认知 · 定量生物学 2019-10-02 Peter H. Baxendale , Priscilla E. Greenwood , Lawrence M. Ward

We investigate Turing pattern formation in a stochastic and spatially discretized version of a reaction diffusion advection (RDA) equation, which was previously introduced to model synaptogenesis in \textit{C. elegans}. The model describes…

统计力学 · 物理学 2020-09-15 Hyunjoong Kim , Paul C. Bressloff

Designing feasible control strategies for opinion dynamics in complex social systems has never been an easy task. It requires a control protocol which 1) is not enforced on all individuals in the society, and 2) does not exclusively rely on…

物理与社会 · 物理学 2019-02-27 Wei Su , Xianzhong Chen , Yongguang Yu , Ge Chen

Self-organizing complex systems can be modeled using cellular automaton models. However, the parametrization of these models is crucial and significantly determines the resulting structural pattern. In this research, we introduce and…

元胞自动机与格子气 · 物理学 2025-01-14 Alexey Kazarnikov , Nadja Ray , Heikki Haario , Joona Lappalainen , Andreas Rupp

We study a minimal model involving two species of particles interacting via quorum-sensing rules. Combining simulations of the microscopic model and linear stability analysis of the associated coarse-grained field theory, we identify a…

统计力学 · 物理学 2023-10-13 Yu Duan , Jaime Agudo-Canalejo , Ramin Golestanian , Benoît Mahault

We introduce a class of exactly solvable models which exhibit an ordering noise-induced phase transition driven by an entropic mechanism. In contrast with previous studies, order does not appear in this case as a result of an instability of…

凝聚态物理 · 物理学 2007-05-23 M. Ibanes , J. Garcia-Ojalvo , R. Toral , J. M. Sancho

Theories of localised pattern formation are important to understand a broad range of natural patterns, but are less well-understood than more established mechanisms of domain-filling pattern formation. Here, we extend recent work on pattern…

斑图形成与孤子 · 物理学 2025-07-22 Andrew L. Krause , Václav Klika , Edgardo Villar-Sepúlveda , Alan R. Champneys , Eamonn A. Gaffney

We explore a mechanism of pattern formation arising in processes described by a system of a single reaction-diffusion equation coupled with ordinary differential equations. Such systems of equations arise from the modeling of interactions…

偏微分方程分析 · 数学 2020-07-15 Steffen Härting , Anna Marciniak-Czochra

We develop a machine learning algorithm to infer the emergent stochastic equation governing the evolution of an order parameter of a many-body system. We train our neural network to independently learn the directed force acting on the order…

无序系统与神经网络 · 物理学 2024-12-10 Francesco Carnazza , Federico Carollo , Sabine Andergassen , Georg Martius , Miriam Klopotek , Igor Lesanovsky
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