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The process of protons transport in molecular water chains is of fundamental interest for many biological systems. Although many features of such systems can be analyzed using large-scale computational modeling, other features are better…

生物物理 · 物理学 2011-08-23 Artem Korzhimanov , Mattias Marklund , Tatiana Shutova , Goran Samuelsson

We report an extensive theoretical study of the protonated water dimer (Zundel ion) by means of the highly correlated variational Monte Carlo and lattice regularized Monte Carlo approaches. This system represents the simplest model for…

化学物理 · 物理学 2013-12-11 Mario Dagrada , Michele Casula , Antonino M. Saitta , Sandro Sorella , Francesco Mauri

In a multiscale modeling approach, we present computer simulation results for a rectifying bipolar nanopore on two modeling levels. In an all-atom model, we use explicit water to simulate ion transport directly with the molecular dynamics…

介观与纳米尺度物理 · 物理学 2018-03-13 Zoltán Ható , Mónika Valiskó , Tamás Kristóf , Dirk Gillespie , Dezső Boda

Dynamic Monte Carlo simulations are used to study coupled transport (co-transport) through sub-nanometer-diameter pores. In this classic Hodgkin-Keynes mechanism, an ion species uses the large flux of an abundant ion species to move against…

软凝聚态物质 · 物理学 2013-11-27 Dezső Boda , Éva Csányi , Dirk Gillespie , Tamás Kristóf

Electric dipoles of water molecules, enclosed singly in regularly spaced nanopores of a cordierite crystal, become ordered at low temperature due to their mutual interaction and show the frequency dependence of their dielectric…

材料科学 · 物理学 2021-08-11 Veniamin A. Abalmasov

Water is essential for life and technological applications, mainly for its unique thermodynamic and dynamic properties, often anomalous or counterintuitive. These anomalies result from the hydrogen-bonds fluctuations, as evidenced by…

软凝聚态物质 · 物理学 2022-09-07 Ioannis Skarmoutsos , Giancarlo Franzese , Elvira Guardia

We present an efficient and robust numerical model for simulation of electrokinetic phenomena in porous networks over a wide range of applications including energy conversion, desalination, and lab-on-a-chip systems. Coupling between fluid…

流体动力学 · 物理学 2016-10-04 Shima Alizadeh , Ali Mani

Over the last decade, an increasing body of evidence has emerged, supporting the existence of a metastable liquid-liquid critical point in supercooled water, whereby two distinct liquid phases of different densities coexist. Analysing long…

软凝聚态物质 · 物理学 2024-08-20 Cesare Malosso , Natalia Manko , Maria Grazia Izzo , Stefano Baroni , Ali Hassanali

Monte Carlo simulations and finite-size scaling analysis have been carried out to study the critical behavior in a submonolayer lattice-gas of interacting monomers adsorbed on one-dimensional channels arranged in a triangular…

强关联电子 · 物理学 2009-11-11 P. M. Pasinetti , F. Roma , J. L. Riccardo , A. J. Ramirez-Pastor

We use computer simulations to study the kinetics and mechanism of proton passage through a narrow-pore carbon-nanotube membrane separating reservoirs of liquid water. Free energy and rate constant calculations show that protons move across…

软凝聚态物质 · 物理学 2009-11-11 Christoph Dellago , Gerhard Hummer

We present a recently developed one-dimensional dipole lattice model that accurately captures the key properties of water in narrow nanopores. For this model, we derive three equivalent representations of the Hamiltonian that together yield…

化学物理 · 物理学 2015-05-13 Jürgen Köfinger , Gerhard Hummer , Christoph Dellago

For the first time, an ab initio molecular dynamics simulation was performed to describe the C$_3$S/water interface. The simulation shows that oxides with favorable environment are protonated at first, creating very stable hydroxide groups.…

Monte Carlo simulation is used to study the dynamical crossover from single file diffusion to normal diffusion in fluids confined to narrow channels. We show that the long time diffusion coefficients for a series of systems involving hard…

软凝聚态物质 · 物理学 2015-06-17 Surajith N. Wanasundara , Raymond J. Spiteri , Richard K. Bowles

Using computer simulations, we study a membrane of parallel narrow pores filled with one-dimensional wires of hydrogen-bonded water molecules. We show that such a membrane is equivalent to a system of effective charges located at opposite…

计算物理 · 物理学 2018-05-24 Georg Menzl , Jürgen Köfinger , Christoph Dellago

The solvation structure of protons in aqueous media is highly relevant to electric properties and to proton transport in liquids and membranes. At ambient temperature, polar liquids display structural fluctuations on femto- to picosecond…

Active matter exhibits various forms of non-equilibrium states in the absence of external forcing, including macroscopic steady-state currents. Such states are often too complex to be modelled from first principles and our understanding of…

软凝聚态物质 · 物理学 2020-09-17 Viktor Škultéty , Cesare Nardini , Joakim Stenhammar , Davide Marenduzzo , Alexander Morozov

We present a study of the local structure of high pressure hydrogen around the liquid-liquid transition line based on results from the Coupled Electron-Ion Monte Carlo method. We report results for the Equation of State, for the radial…

统计力学 · 物理学 2018-05-09 Carlo Pierleoni , Markus Holzmann , David M. Ceperley

We present a hydrodynamic theory describing pair diffusion in systems with periodic boundary conditions, thereby generalizing earlier work on self-diffusion [D\"unweg and Kremer, J. Chem. Phys. 1993, 99, 6983-6997; Yeh and Hummer, J. Phys.…

软凝聚态物质 · 物理学 2023-05-03 Diddo Diddens , Andreas Heuer

The correlation between electrons in different quantum wires is expected to affect the electronic properties of quantum electron-electron biwire systems. Here, we use the variational Monte Carlo method to study the ground-state properties…

量子气体 · 物理学 2021-08-04 Rajesh O. Sharma , N. D. Drummond , Vinod Ashokan , K. N. Pathak , Klaus Morawetz

Kinetic equations for the stationary state distribution function of ions moving through narrow pores are solved for a number of one-dimensional models of single ion transport. Ions move through pores of length $L$, under the action of a…

软凝聚态物质 · 物理学 2009-11-10 Jaroslaw Piasecki , Rosalind J. Allen , Jean-Pierre Hansen
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