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A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

生物物理 · 物理学 2015-05-30 Makiko Nonomura

The description of surface-diffusion controlled dynamics via the phase-field method is less trivial than it appears at first sight. A seemingly straightforward approach from the literature is shown to fail to produce the correct…

计算物理 · 物理学 2017-03-13 Clemens Mueller-Gugenberger , Robert Spatschek , Klaus Kassner

It is demonstrated that the description of surface-diffusion controlled dynamics via the phase-field method is less trivial than it appears at first sight. A seemingly straightforward approach previously used in the literature is shown to…

其他凝聚态物理 · 物理学 2007-05-23 Klaus Kassner

The process of programmed cell death, namely apoptosis, is a natural mechanism that regulates healthy tissue, multicellular structures, and homeostasis. An improved understanding of apoptosis can significantly enhance our knowledge of…

The phase-field method is reviewed from the general perspective of converting a free boundary problem into a set of coupled partial differential equations. Its main advantage is that it avoids front tracking by using phase fields to locate…

A phase field approach is proposed to model the chemotaxis of Dictyostelium discoideum. In this framework, motion is controlled by active forces as determined by the Meinhardt model of chemical dynamics which is used to simulate directional…

生物物理 · 物理学 2023-03-01 Yunsong Zhang , Herbert Levine , Yanxiang Zhao

We suggest a 3D phase field model to describe 3D cell spreading on a flat substrate. The model is a simplified version of a minimal model that was developed in [1]. Our model couples the order parameter $u$ with 3D polarization…

生物物理 · 物理学 2021-06-25 Mohammad Abu Hamed , Alexander A. Nepomnyashchy

In the present article we study diffuse interface models for two-phase biomembranes. We will do so by starting off with a diffuse interface model on $\mathbb{R}^n$ defined by two coupled phase fields $u,v$. The first phase field $u$ is the…

偏微分方程分析 · 数学 2024-07-24 Benjamin Lledos , Roberta Marziani , Heiner Olbermann

In this paper we develop a field-theoretic description for run and tumble chemotaxis, based on a density functional description of crystalline materials modified to capture orientational ordering. We show that this framework, with its…

软凝聚态物质 · 物理学 2021-03-10 Purba Chatterjee , Nigel Goldenfeld

Phase field modelling offers an extremely general framework to predict microstructural evolutions in complex systems. However, its computational implementation requires a discretisation scheme with a grid spacing small enough to preserve…

计算物理 · 物理学 2018-07-18 Alphonse Finel , Yann Le Bouar , Benoît Dabas , Benoît Appolaire

A thermodynamic approach to rapid phase transformations within a diffuse interface in a binary system is developed. Assuming an extended set of independent thermodynamic variables formed by the union of the classic set of slow variables and…

材料科学 · 物理学 2009-11-10 Peter Galenko , David Jou

A thermodynamically consistent phase-field model is introduced for simulating multicellular deformation, and aggregation under flow conditions. In particular, a Lennard-Jones type potential is proposed under the phase-field framework for…

数值分析 · 数学 2022-05-17 Lingyue Shen , Ping Lin , Zhiliang Xu , Shixin Xu

We present an overview of phase field modeling of active matter systems as a tool for capturing various aspects of complex and active interfaces. We first describe how interfaces between different phases are characterized in phase field…

软凝聚态物质 · 物理学 2021-02-26 Romain Mueller , Amin Doostmohammadi

In this paper, a thermal-dynamical consistent model for mass transfer across permeable moving interfaces is proposed by using the energy variation method. We consider a restricted diffusion problem where the flux across the interface…

数值分析 · 数学 2022-06-15 Yuzhe Qin , Huaxiong Huang , Yi Zhu , Chun Liu , Shixin Xu

In this paper, phase field models are developed for multi-component vesicle membranes with different lipid compositions and membranes with free boundary. These models are used to simulate the deformation of membranes under the elastic…

生物物理 · 物理学 2007-05-23 Xiaoqiang Wang , Qiang Du

We minimized the interface diffuseness in the phase-field models by introducing the parabolic double-well potential and localizing the solute redistribution (or latent heat release) into a narrow region within the phase-field interface. In…

材料科学 · 物理学 2007-05-23 Seong Gyoon Kim , Won Tae Kim , Toshio Suzuki

In this paper we present a mathematical study of particle diffusion inside and outside a spherical biological cell that has been exposed on one side to a propagating planar diffusive front. The media inside and outside the spherical cell…

生物物理 · 物理学 2024-06-11 Sandeep Santhosh Kumar , Stanley J. Miklavcic

In this work, we analytically investigate a multi-component system for describing phase separation and damage processes in solids. The model consists of a parabolic diffusion equation of fourth order for the concentration coupled with an…

偏微分方程分析 · 数学 2013-12-09 Elena Bonetti , Christian Heinemann , Christiane Kraus , Antonio Segatti

We develop a phase-field model for evaporation from a porous medium by explicitly considering a vapor component together with the liquid and gas phases in the system. The phase-field model consists of the conservation of mass (for phases…

偏微分方程分析 · 数学 2024-07-26 Tufan Ghosh , Carina Bringedal , Christian Rohde , Rainer Helmig

Membrane phase-separation is a mechanism that biological membranes often use to locally concentrate specific lipid species in order to organize diverse membrane processes. Phase separation has also been explored as a tool for the design of…

计算物理 · 物理学 2020-06-26 Alexander Zhiliakov , Yifei Wang , Annalisa Quaini , Maxim Olshanskii , Sheereen Majd
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