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Three novel applications of computational topology in the field of fusion science are developed. A procedure for the automatic classification of the orbits of magnetic field lines into topologically distinct classes using Vietoris-Rips…

等离子体物理 · 物理学 2024-10-25 Nicholas Bohlsen

We introduce PH-STAT, a comprehensive MATLAB toolbox designed for performing a wide range of statistical inferences and machine learning tasks on persistent homology, primarily for network and graph data, with an emphasis on brain network…

代数拓扑 · 数学 2025-02-20 Moo K. Chung

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

代数拓扑 · 数学 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

The increasing ability to collect data from urban environments, coupled with a push towards openness by governments, has resulted in the availability of numerous spatio-temporal data sets covering diverse aspects of a city. Discovering…

数据库 · 计算机科学 2016-10-25 Fernando Chirigati , Harish Doraiswamy , Theodoros Damoulas , Juliana Freire

Multidimensional persistence studies topological features of shapes by analyzing the lower level sets of vector-valued functions. The rank invariant completely determines the multidimensional analogue of persistent homology groups. We prove…

代数拓扑 · 数学 2009-08-04 Andrea Cerri , Barbara Di Fabio , Massimo Ferri , Patrizio Frosini , Claudia Landi

In the last decades, complex networks theory significantly influenced other disciplines on the modeling of both static and dynamic aspects of systems observed in nature. This work aims to investigate the effects of networks' topological…

神经与进化计算 · 计算机科学 2012-02-09 Matteo De Felice , Sandro Meloni , Stefano Panzieri

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

定量方法 · 定量生物学 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett

The surge of data available on the Internet has driven the adoption of a wide range of computational methods for analyzing and extracting insights from large-scale data. Among these, Machine Learning (ML) has become a central paradigm,…

计算与语言 · 计算机科学 2026-05-12 Adaku Uchendu , Thai Le

We study the statistics of ecosystems with a variable number of co-evolving species. The species interact in two ways: by prey-predator relationships and by direct competition with similar kinds. The interaction coefficients change slowly…

适应与自组织系统 · 物理学 2015-06-26 Michael Lassig , Ugo Bastolla , Susanna C. Manrubia , Angelo Valleriani

Topological data analysis is an emerging field that applies the study of topological invariants to data. Perhaps the simplest of these invariants is the number of connected components or clusters. In this work, we explore a topological…

计算几何 · 计算机科学 2023-12-19 Ian Stewart Joyce , Grant Erdmann , Kirk P. Gardner , Ryan Kramer , Kyle Siegrist

The coexistence of multiple phytoplankton species despite their reliance on similar resources is often explained with mean-field models assuming mixed populations. In reality, observations of phytoplankton indicate spatial aggregation at…

种群与进化 · 定量生物学 2024-04-23 Coralie Picoche , William R. Young , Frédéric Barraquand

Tumor shape plays a critical role in influencing both growth and metastasis. We introduce a novel topological radiomic feature derived from persistent homology to characterize tumor shape, focusing on its association with time-to-event…

统计方法学 · 统计学 2025-12-08 Yuhyeong Jang , Tu Dan , Eric Vu , Chul Moon

Topological data analysis, as a tool for extracting topological features and characterizing geometric shapes, has experienced significant development across diverse fields. Its key mathematical techniques include persistent homology and the…

代数拓扑 · 数学 2024-04-19 Jian Liu , Dong Chen , Guo-Wei Wei

A topological shape analysis is proposed and utilized to learn concepts that reflect shape commonalities. Our approach is two-fold: i) a spatial topology analysis of point cloud segment constellations within objects. Therein constellations…

计算机视觉与模式识别 · 计算机科学 2018-11-22 Christian A. Mueller , Andreas Birk

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

代数拓扑 · 数学 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

In this study, we present and analyze a framework for geometric and topological estimation for mapping of unknown environments. We consider agents mimicking motion behaviors of cyborg insects, known as biobots, and exploit coordinate-free…

机器人学 · 计算机科学 2016-07-04 Alireza Dirafzoon , Alper Bozkurt , Edgar Lobaton

Inspired by topological data analysis techniques, we introduce persistent homology observables and apply them in a geometric analysis of the dynamics of quantum field theories. As a prototype application, we consider data from a…

量子气体 · 物理学 2021-09-23 Daniel Spitz , Jürgen Berges , Markus K. Oberthaler , Anna Wienhard

3-D shape is important to chemistry, but how important? Machine learning works best when the inputs are simple and match the problem well. Chemistry datasets tend to be very small compared to those generally used in machine learning so we…

机器学习 · 计算机科学 2023-04-18 Ella Gale

Heterogeneity in characteristics from one region (sub-population) to another, commonly observed in complex systems, such as glasses and a collection of cells, is hard to describe theoretically. In the context of cancer, intra-tumor…

软凝聚态物质 · 物理学 2022-02-23 Sumit Sinha , Xin Li , Dave Thirumalai

This work introduces a number of algebraic topology approaches, such as multicomponent persistent homology, multi-level persistent homology and electrostatic persistence for the representation, characterization, and description of small…

定量方法 · 定量生物学 2018-02-07 Zixuan Cang , Lin Mu , Guowei Wei