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Dysregulation in signal transduction pathways can lead to a variety of complex disorders, including cancer. Computational approaches such as network analysis are important tools to understand system dynamics as well as to identify critical…

分子网络 · 定量生物学 2015-11-12 Bhanwar Lal Puniya , Laura Allen , Colleen Hochfelder , Mahbubul Majumder , Tomáš Helikar

In this paper, we propose a tumor growth model to incorporate and investigate the spatial effects of autophagy. The cells are classified into two phases: normal cells and autophagic cells, whose dynamics are also coupled with the nutrients.…

偏微分方程分析 · 数学 2021-08-31 Xu'an Dou , Jian-Guo Liu , Zhennan Zhou

Using basic thermodynamic principles we derive a Cahn--Hilliard--Darcy model for tumour growth including nutrient diffusion, chemotaxis, active transport, adhesion, apoptosis and proliferation. The model generalises earlier models and in…

偏微分方程分析 · 数学 2016-06-06 Harald Garcke , Kei Fong Lam , Emanuel Sitka , Vanessa Styles

In this paper we develop mathematical models for collective cell motility. Initially we develop a model using a linear diffusion-advection type equation and fit the parameters to data from cell motility assays. This approach is helpful in…

细胞行为 · 定量生物学 2012-03-23 Jason M. Graham , Bruce P. Ayati

Complex systems, ranging from living cells to human societies, can be represented as attractor networks, whose basic property is to exist in one of allowed states, or attractors. We noted that merging two systems that are in distinct…

分子网络 · 定量生物学 2015-06-03 Alexei A. Koulakov , Yuri Lazebnik

We investigate a recently proposed cross-diffusion system modelling the growth of gliobastoma taking into account size exclusion both in the migration and proliferation process. In addition to degenerate nonlinear cross-diffusion the model…

偏微分方程分析 · 数学 2017-10-12 Martin Burger , Patricia Friele , Jan-Frederik Pietschmann

It has been shown experimentally that contact interactions may influence the migration of cancer cells. Previous works have modelized this thanks to stochastic, discrete models (cellular automata) at the cell level. However, for the study…

细胞行为 · 定量生物学 2009-03-26 Christophe Deroulers , Marine Aubert , Mathilde Badoual , Basil Grammaticos

Computational modeling of cancer can help unveil dynamics and interactions that are hard to replicate experimentally. Thanks to the advancement in cancer databases and data analysis technologies, these models have become more robust than…

定量方法 · 定量生物学 2023-11-07 Navid Mohammad Mirzaei , Leili Shahriyari

Heterogeneity within tumour cell populations is associated with an increase in malignancy and appears to play an important role during cancer metastasis. Using in silico experiments, we study the interplay between collective behaviours and…

组织与器官 · 定量生物学 2015-01-05 Adrien Hallou , Joel Jennings , Alexandre Kabla

Analysis of invasion front has been widely used to decipher biological properties, as well as the growth dynamics of the corresponding populations. Likewise, the invasion front of tumors has been investigated, from which insights into the…

统计力学 · 物理学 2019-12-19 Youness Azimzade , Abbas Ali Saberi , Muhammad Sahimi

Central to the quest for a deeper understanding of the cancer growth and spread process, the naturally multiscale character of cancer invasion demands appropriate multiscale modelling and analysis approach. The cross-talk between the tissue…

In this paper, we study a distributed optimal control problem for a diffuse interface model for tumor growth. The model consists of a Cahn-Hilliard type equation for the phase field variable coupled to a reaction diffusion equation for the…

最优化与控制 · 数学 2021-10-12 Matthias Ebenbeck , Patrik Knopf

Tumors constitute a wide family of diseases kinetically characterized by the co-presence of multiple spatio-temporal scales. So, tumor cells ecologically interplay with other kind of cells, e.g. endothelial cells or immune system effectors,…

计算工程、金融与科学 · 计算机科学 2012-08-21 Giulio Caravagna , Alex Graudenzi , Marco Antoniotti , Giancarlo Mauri , Alberto d'Onofrio

Predictive modeling of the evolutionary dynamics of cancer is a challenge issue in computational cancer biology. In this paper, we propose a general mathematical model framework for the evolutionary dynamics of cancer with plasticity and…

细胞行为 · 定量生物学 2020-01-10 Jinzhi Lei

In this work we analyse a PDE-ODE problem modelling the evolution of a Glioblastoma, which includes an anisotropic nonlinear diffusion term with a diffusion velocity increasing with respect to vasculature. First, we prove the existence of…

偏微分方程分析 · 数学 2021-09-21 A. Fernández-Romero , F. Guillén-González , A. Suárez

In this work, we introduce a variant of the Gatenby-Gawlinski model for acid-mediated tumor invasion in the one-dimensional experimental setting, accounting for heterogeneous diffusion of the lactic acid across the surrounding healthy…

偏微分方程分析 · 数学 2025-11-11 Chiara Simeoni , Elisa Scanu , Donato Pera , Corrado Mascia

Intra-tumour phenotypic heterogeneity limits accuracy of clinical diagnostics and hampers the efficiency of anti-cancer therapies. Dealing with this cellular heterogeneity requires adequate understanding of its sources, which is extremely…

We consider a diffuse interface model for tumor growth consisting of a Cahn--Hilliard equation with source terms coupled to a reaction-diffusion equation, which models a tumor growing in the presence of a nutrient species and surrounded by…

偏微分方程分析 · 数学 2017-05-04 Harald Garcke , Kei Fong Lam

We present and analyze new multi-species phase-field mathematical models of tumor growth and ECM invasion. The local and nonlocal mathematical models describe the evolution of volume fractions of tumor cells, viable cells (proliferative and…

偏微分方程分析 · 数学 2020-02-20 Marvin Fritz , Ernesto A. B. F. Lima , Vanja Nikolić , J. Tinsley Oden , Barbara Wohlmuth

We propose a novel approach to modeling cell migration in an anisotropic environment with biochemical heterogeneity and interspecies interactions, using as a paradigm glioma invasion in brain tissue under the influence of hypoxia-triggered…

组织与器官 · 定量生物学 2021-04-14 Anne Dietrich , Niklas Kolbe , Nikolaos Sfakianakis , Christina Surulescu