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Graph-based representations of point-cloud data are widely used in data science and machine learning, including epsilon-graphs that contain edges between pairs of data points that are nearer than epsilon and kNN-graphs that connect each…

代数拓扑 · 数学 2022-06-13 Minh Quang Le , Dane Taylor

Machine learning methods have a long history of applications in high energy physics (HEP). Recently, there is a growing interest in exploiting these methods to reconstruct particle signatures from raw detector data. In order to benefit from…

高能物理 - 唯象学 · 物理学 2022-03-17 Javier Duarte , Jean-Roch Vlimant

This work is related to PHG (Parallel Hierarchical Grid). PHG is a toolbox for developing parallel adaptive finite element programs, which is under active development at the State Key Laboratory of Scientific and Engineering Computing. The…

计算工程、金融与科学 · 计算机科学 2016-11-28 Hui Liu

Recently, there has been an emerging trend to integrate persistent homology (PH) into graph neural networks (GNNs) to enrich expressive power. However, naively plugging PH features into GNN layers always results in marginal improvement with…

机器学习 · 计算机科学 2024-10-21 Chaolong Ying , Xinjian Zhao , Tianshu Yu

Graphical models find numerous applications in biology, chemistry, sociology, neuroscience, etc. While substantial progress has been made in graph estimation, it remains largely unexplored how to select significant graph signals with…

统计理论 · 数学 2024-03-20 Jiajun Liang , Yue Liu , Doudou Zhou , Sinian Zhang , Junwei Lu

Persistent homology is a popular and powerful tool for capturing topological features of data. Advances in algorithms for computing persistent homology have reduced the computation time drastically -- as long as the algorithm does not…

计算几何 · 计算机科学 2013-10-03 Ulrich Bauer , Michael Kerber , Jan Reininghaus

Persistent homology is a central methodology in topological data analysis that has been successfully implemented in many fields and is becoming increasingly popular and relevant. The output of persistent homology is a persistence diagram --…

统计理论 · 数学 2024-04-24 Konstantin Häberle , Barbara Bravi , Anthea Monod

In this paper, we employ the persistent homology (PH) technique to examine the topological properties of fractional Gaussian noise (fGn). We develop the weighted natural visibility graph algorithm, and the associated simplicial complexes…

数据分析、统计与概率 · 物理学 2022-06-17 H. Masoomy , B. Askari , M. N. Najafi , S. M. S. Movahed

In recent years, Dynamic Graph (DG) representations have been increasingly used for modeling dynamic systems due to their ability to integrate both topological and temporal information in a compact representation. Dynamic graphs allow to…

机器学习 · 计算机科学 2023-04-13 Leshanshui Yang , Sébastien Adam , Clément Chatelain

From social networks to protein complexes to disease genomes to visual data, hypergraphs are everywhere. However, the scope of research studying deep learning on hypergraphs is still quite sparse and nascent, as there has not yet existed an…

机器学习 · 计算机科学 2019-10-08 Josh Payne

This paper studies the problem of traffic flow forecasting, which aims to predict future traffic conditions on the basis of road networks and traffic conditions in the past. The problem is typically solved by modeling complex…

机器学习 · 计算机科学 2023-09-22 Yusheng Zhao , Xiao Luo , Wei Ju , Chong Chen , Xian-Sheng Hua , Ming Zhang

Directionality in molecular and biomolecular networks plays a significant role in the accurate represention of the complex, dynamic, and asymmetrical nature of interactions present in protein-ligand binding, signal transduction, and…

生物大分子 · 定量生物学 2024-11-08 Mushal Zia , Benjamin Jones , Hongsong Feng , Guo-Wei Wei

Variability in illumination is a primary factor limiting deep learning robustness for field-based plant disease detection. This study evaluates Histogram Matching (HM), a technique that transforms the pixel intensity distribution of an…

计算机视觉与模式识别 · 计算机科学 2026-04-22 Ruben Pascual , Inés Hernández , Salvador Gutiérrez , Javier Tardaguila , Pedro Melo-Pinto , Daniel Paternain , Mikel Galar

Depression represents a global mental health challenge requiring efficient and reliable automated detection methods. Current Transformer- or Graph Neural Networks (GNNs)-based multimodal depression detection methods face significant…

机器学习 · 计算机科学 2025-11-18 Changzeng Fu , Shiwen Zhao , Yunze Zhang , Zhongquan Jian , Shiqi Zhao , Chaoran Liu

In this paper we introduce a statistic, the persistent homology transform (PHT), to model surfaces in $\mathbb{R}^3$ and shapes in $\mathbb{R}^2$. This statistic is a collection of persistence diagrams - multiscale topological summaries…

统计理论 · 数学 2014-07-16 Katharine Turner , Sayan Mukherjee , Doug M Boyer

This article aims to study the topological invariant properties encoded in node graph representational embeddings by utilizing tools available in persistent homology. Specifically, given a node embedding representation algorithm, we…

机器学习 · 计算机科学 2021-10-12 Mustafa Hajij , Ghada Zamzmi , Xuanting Cai

Finding patterns in graphs is a fundamental problem in databases and data mining. In many applications, graphs are temporal and evolve over time, so we are interested in finding durable patterns, such as triangles and paths, which persist…

数据库 · 计算机科学 2024-03-26 Pankaj K. Agarwal , Xiao Hu , Stavros Sintos , Jun Yang

The persistent homology transform (PHT) represents a shape with a multiset of persistence diagrams parameterized by the sphere of directions in the ambient space. In this work, we describe a finite set of diagrams that discretize the PHT…

计算几何 · 计算机科学 2026-05-26 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

Deep learning methods exhibit promising performance for predictive modeling in healthcare, but two important challenges remain: -Data insufficiency:Often in healthcare predictive modeling, the sample size is insufficient for deep learning…

机器学习 · 计算机科学 2017-04-04 Edward Choi , Mohammad Taha Bahadori , Le Song , Walter F. Stewart , Jimeng Sun

Statistical pattern classification methods based on data-random graphs were introduced recently. In this approach, a random directed graph is constructed from the data using the relative positions of the data points from various classes.…

统计方法学 · 统计学 2008-02-06 E. Ceyhan , C. E. Priebe , J. C. Wierman