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Graph Neural Networks (GNNs) have achieved state-of-the-art (SOTA) performance in diverse domains. However, training GNNs on large-scale graphs poses significant challenges due to high memory demands and significant communication overhead…

分布式、并行与集群计算 · 计算机科学 2025-05-19 Arefin Niam , M S Q Zulkar Nine

Graph generative models have broad applications in biology, chemistry and social science. However, modelling and understanding the generative process of graphs is challenging due to the discrete and high-dimensional nature of graphs, as…

机器学习 · 计算机科学 2022-12-06 Han Huang , Leilei Sun , Bowen Du , Yanjie Fu , Weifeng Lv

Capturing data from dynamic processes through cross-sectional measurements is seen in many fields, such as computational biology. Trajectory inference deals with the challenge of reconstructing continuous processes from such observations.…

机器学习 · 计算机科学 2025-03-12 Amartya Banerjee , Harlin Lee , Nir Sharon , Caroline Moosmüller

This paper deals with the large-scale behaviour of dynamical optimal transport on $\mathbb{Z}^d$-periodic graphs with general lower semicontinuous and convex energy densities. Our main contribution is a homogenisation result that describes…

偏微分方程分析 · 数学 2021-10-29 Peter Gladbach , Eva Kopfer , Jan Maas , Lorenzo Portinale

Distributed distribution comparison aims to measure the distance between the distributions whose data are scattered across different agents in a distributed system and cannot even be shared directly among the agents. In this study, we…

机器学习 · 计算机科学 2024-07-23 Xiangfeng Wang , Hongteng Xu , Moyi Yang

Optimal transport has gained significant attention in recent years due to its effectiveness in deep learning and computer vision. Its descendant metric, the Wasserstein distance, has been particularly successful in measuring distribution…

最优化与控制 · 数学 2025-02-18 Kaiwen Shi

Generative Adversarial Networks (GANs) are one of the most practical methods for learning data distributions. A popular GAN formulation is based on the use of Wasserstein distance as a metric between probability distributions.…

机器学习 · 计算机科学 2018-05-23 Maziar Sanjabi , Jimmy Ba , Meisam Razaviyayn , Jason D. Lee

Efficient processing of large-scale time series data is an intricate problem in machine learning. Conventional sensor signal processing pipelines with hand engineered feature extraction often involve huge computational cost with high…

For uncertainty propagation of highly complex and/or nonlinear problems, one must resort to sample-based non-intrusive approaches [1]. In such cases, minimizing the number of function evaluations required to evaluate the response surface is…

数值分析 · 数学 2017-12-04 Anindya Bhaduri , Lori Graham-Brady

In this paper, we address the problem of optimal relay placement in a cellular network assuming network densification, with the aim of maximizing cell capacity. In our model, a fraction of radio resources is dedicated to the base-station…

网络与互联网体系结构 · 计算机科学 2013-07-17 Jean-Marc Kelif , Marceau Coupechoux , Marc Sigelle

In recent years, the field of single-cell data analysis has seen a marked advancement in the development of clustering methods. Despite advancements, most of these algorithms still concentrate on analyzing the provided single-cell matrix…

机器学习 · 计算机科学 2023-12-18 Dayu Hu , Ke Liang , Hao Yu , Xinwang Liu

Fr\'echet regression extends the principles of linear regression to accommodate responses valued in generic metric spaces. While this approach has primarily focused on exploring relationships between Euclidean predictors and non-Euclidean…

统计理论 · 数学 2026-02-25 Chang Jun Im , Jeong Min Jeon

Efficient sorting of target cells is crucial for advancing cellular research in biology and medical diagnostics. Inertial microfluidics, an emerging technology, offers a promising approach for label-free particle sorting with high…

流体动力学 · 物理学 2023-08-04 Sayan Karmakar , Md Safwan Mondal , Anish Pal , Sourav Sarkar

The life of a cell is governed by highly dynamical microscopic processes. Two notable examples are the diffusion of membrane receptors and the kinetics of transcription factors governing the rates of gene expression. Different fluorescence…

定量方法 · 定量生物学 2020-04-03 Maxime Woringer , Ignacio Izeddin , Cyril Favard , Hugues Berry

In this paper, we address the problem of estimating the migration direction of cells based on a single image. A solution to this problem lays the foundation for a variety of applications that were previously not possible. To our knowledge,…

计算机视觉与模式识别 · 计算机科学 2025-10-30 Lennart Bruns , Lucas Lamparter , Milos Galic , Xiaoyi Jiang

Single-cell RNA sequencing (scRNA-seq) has revolutionized our ability to study individual cellular distinctions and uncover unique cell characteristics. However, a significant technical challenge in scRNA-seq analysis is the occurrence of…

基因组学 · 定量生物学 2024-07-25 Yoshitaka Inoue

Graph Neural Networks (GNN) are reshaping our understanding of biomedicine and diseases by revealing the deep connections among genes and cells. As both algorithmic and biomedical technologies have advanced significantly, we're entering a…

The recent advances in single-cell technologies have enabled us to profile genomic features at unprecedented resolution and datasets from multiple domains are available, including datasets that profile different types of genomic features…

机器学习 · 统计学 2020-06-09 Pengcheng Zeng , Zhixiang Lin

Correctly estimating the discrepancy between two data distributions has always been an important task in Machine Learning. Recently, Cuturi proposed the Sinkhorn distance which makes use of an approximate Optimal Transport cost between two…

计算机视觉与模式识别 · 计算机科学 2018-01-18 Ying Lu , Liming Chen , Alexandre Saidi , Xianfeng Gu

Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models of those interactions. These methods often draw on large…

分子网络 · 定量生物学 2018-06-29 Marieke Lydia Kuijjer , Matthew Tung , GuoCheng Yuan , John Quackenbush , Kimberly Glass
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