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All-atom molecular dynamics has been recently proven a useful tool for the study of supramolecular polymers. While the high resolution offered by the atomistic models may allow for deep comprehension of the assembled structure, obtaining a…

软凝聚态物质 · 物理学 2018-04-20 Davide Bochicchio , Giovanni M. Pavan

Dynamical systems, that are used to model power grids, the brain, and other physical systems, can exhibit coexisting stable states known as attractors. A powerful tool to understand such systems, as well as to better predict when they may…

动力系统 · 数学 2023-07-31 George Datseris , Kalel Luiz Rossi , Alexandre Wagemakers

Advances in experimental techniques enable the precise manipulation of a large variety of active systems, which constantly dissipate energy to sustain nonequilibrium phenomena without any equilibrium equivalent. To design novel materials…

统计力学 · 物理学 2025-06-03 Artur Soriani , Elsen Tjhung , Étienne Fodor , Tomer Markovich

We consider a continuum model of active viscoelastic matter, whereby an active nematic liquid-crystal is coupled to a minimal model of polymer dynamics with a viscoelastic relaxation time $\tau_C$. To explore the resulting interplay between…

软凝聚态物质 · 物理学 2016-03-30 E. J. Hemingway , M. E. Cates , S. M. Fielding

We derive thermodynamically consistent models for diblock copolymer solutions coupled with the electric and magnetic field, respectively. These models satisfy the second law of thermodynamics and therefore are therefore thermodynamically…

数值分析 · 数学 2021-03-30 Xiaowen Shen , Qi Wang

We formulate a self-consistent procedure for calculation of thermodynamic and structural properties of polymer solutions based on the Gaussian equivalent representation method (GER) for functional integrals calculation beyond the mean-field…

统计力学 · 物理学 2015-07-31 Yu. A. Budkov , E. A. Nogovitsin , A. L. Kolesnikov

We use molecular dynamics simulations to study the dynamics of an ensemble of interacting self-propelled semi-flexible polymers in contact with a thermal bath. Our intention is to model complex systems of biological interest. We find that…

软凝聚态物质 · 物理学 2011-05-06 Davide Loi , Stefano Mossa , Leticia F. Cugliandolo

Equilibration of polymer melts containing highly entangled long polymer chains in confinement or with free surfaces is a challenge for computer simulations. We approach this problem by first studying polymer melts based on the soft-sphere…

软凝聚态物质 · 物理学 2020-10-14 Hsiao-Ping Hsu , Kurt Kremer

Comments: 6 pages RevTeX, 6 Postscript figures. We review a statistical mechanics treatment of the stability of globular proteins based on a simple model Hamiltonian taking into account protein self interactions and protein-water…

凝聚态物理 · 物理学 2009-10-31 Alex Hansen , Mogens H. Jensen , Kim Sneppen , Giovanni Zocchi

In this work, we introduce a polymer discovery platform to efficiently design polymers with tailored properties, exemplified by the discovery of high-performance polymer electrolytes. The platform integrates three core components: a…

化学物理 · 物理学 2025-04-04 Arash Khajeh , Xiangyun Lei , Weike Ye , Zhenze Yang , Daniel Schweigert , Ha-Kyung Kwon

The sensitivity of the native states of protein-like heteropolymers to mutations modelled as perturbations in the interaction potential between amino acids is studied. The stability threshold against mutations is shown to be zero for random…

软凝聚态物质 · 物理学 2009-10-30 Michele Vendruscolo , Amos Maritan , Jayanth R. Banavar

Random heteropolymers do not display the typical equilibrium properties of globular proteins, but are the starting point to understand the physics of proteins and, in particular, to describe their non-native states. So far, they have been…

生物大分子 · 定量生物学 2015-06-03 Guido Tiana , Ludovico Sutto

We review some recent coarse-graining and multi-scale methods, but also put forward some new ideas for addressing such issues. We find that, if one is guided by nonequilibrium statistical mechanics and thermodynamics, it is possible to…

软凝聚态物质 · 物理学 2009-11-06 Patrick Ilg , Vlasis Mavrantzas , Hans Christian Öttinger

The stabilization of macromolecules is fundamental to developing biological formulations, such as vaccines and protein therapeutics. In this study, we employ coarse grained polymer models to investigate the impact of four sugars:…

软凝聚态物质 · 物理学 2025-11-26 Praveen Muralikrishnan , Jonathan W. P. Zajac , Caryn L. Heldt , Sarah L. Perry , Sapna Sarupria

The inelastic incompressibility is a typical feature of metal plasticity/viscoplasticity. Over the last decade, there has been a great amount of research related to construction of numerical integration algorithms which exactly preserve…

数值分析 · 数学 2013-02-22 A. V. Shutov , R. Kreissig

Phase-separated biomolecular condensates exhibit a wide range of dynamical properties, which depend on the sequences of the constituent proteins and RNAs. However, it is unclear to what extent condensate dynamics can be tuned without also…

生物大分子 · 定量生物学 2024-07-31 Yaxin An , Michael A. Webb , William M. Jacobs

The conformational and dynamical properties of active polymers in solution are determined by the nature of the activity, and the behavior of polymers with self-propelled, active Brownian particle-type monomers differs qualitatively from…

软凝聚态物质 · 物理学 2020-05-27 Aitor Martin-Gomez , Thomas Eisenstecken , Gerhard Gompper , Roland G. Winkler

The energetic optimization problem, e.g., searching for the optimal switch- ing protocol of certain system parameters to minimize the input work, has been extensively studied by stochastic thermodynamics. In current work, we study this…

统计力学 · 物理学 2010-01-07 Linchen Gong , Ming Li , Zhong-can Ou-yang

Plasticisers (PLs) are small additives commonly incorporated into polymer composites to enhance processability and improve mechanical properties. Their effectiveness depends heavily on their miscibility within the polymer melt, yet…

软凝聚态物质 · 物理学 2025-05-07 Lois Smith , Jessica Steele , Hossein Ali Karimi-Varzaneh , Paola Carbone

Molecular-scale materials with bistable behavior and tunable properties are increasingly relevant for next-generation nanoscale electronic devices. Helical foldamers are promising candidates, but their structural and mechanical properties…

介观与纳米尺度物理 · 物理学 2026-03-17 Kseniia Storozheva , Anastasia Markina , Vladik Avetisov