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Host mobility plays a fundamental role in the spatial spread of infectious diseases. Previous theoretical works based on the integration of network theory into the metapopulation framework have shown that the heterogeneities that…

物理与社会 · 物理学 2013-09-26 Chiara Poletto , Michele Tizzoni , Vittoria Colizza

Various theoretical studies have been carried out to infer relevant protein-protein interactions among pathogens and their hosts. Such studies are generally based on preferential attachment of bacteria / virus to their human receptor…

分子网络 · 定量生物学 2019-07-09 S. Chatterjee , B. S. Sanjeev

Machine learning has been an emerging tool for various aspects of infectious diseases including tuberculosis surveillance and detection. However, WHO provided no recommendations on using computer-aided tuberculosis detection software…

计算机视觉与模式识别 · 计算机科学 2020-08-04 Seelwan Sathitratanacheewin , Krit Pongpirul

Spatial extent is a complicating factor in mathematical biology. The possibility that an action at point A cannot immediately affect what happens at point B creates the opportunity for spatial nonuniformity. This nonuniformity must change…

元胞自动机与格子气 · 物理学 2014-01-03 Blake C. Stacey , Andreas Gros , Yaneer Bar-Yam

Traditionally, diagnosis and treatment of fungal infections in humans depend heavily on face-to-face consultations or examinations made by specialized laboratory scientists known as mycologists. In many cases, such as the recent…

图像与视频处理 · 电气工程与系统科学 2021-09-16 Camilo Javier Pineda Sopo , Farshid Hajati , Soheila Gheisari

Highly malignant brain tumors such as Glioblastoma Multiforme (GBM) form complex growth patterns in vitro in which invasive cells organize in tenuous branches. Here, we formulate a chemotaxis model for this sort of growth. A key element…

生物物理 · 物理学 2009-11-07 Leonard M. Sander , Thomas S. Deisboeck

Infectious diseases, either emerging or long-lasting, place numerous people at risk and bring heavy public health burdens worldwide. In the process against infectious diseases, predicting the epidemic risk by modeling the disease…

机器学习 · 计算机科学 2023-08-08 Mutong Liu , Yang Liu , Jiming Liu

We consider the problem of designing synthetic cells to achieve a complex goal (e.g., mimicking the immune system by seeking invaders) in a complex environment (e.g., the circulatory system), where they might have to change their control…

机器人学 · 计算机科学 2020-03-10 Ana Pervan , Todd Murphey

Cellular rearrangements, as primary sources of tissue fluidization, facilitate topological transitions during tissue morphogenesis. We study the role of intrinsic cell properties such as cell polarity and cell-cell adhesion in shaping…

生物物理 · 物理学 2024-03-11 Richard D. J. G. Ho , Stig Ove Bøe , Dag Kristian Dysthe , Luiza Angheluta

Topological Deep Learning seeks to enhance the predictive performance of neural network models by harnessing topological structures in input data. Topological neural networks operate on spaces such as cell complexes and hypergraphs, that…

Experiments have shown that bacteria can be sensitive to small variations in chemoattractant (CA) concentrations. Motivated by these findings, our focus here is on a regime rarely studied in experiments: bacteria tracking point CA sources…

细胞行为 · 定量生物学 2016-05-03 Hossein Jashnsaz , Tyler Nguyen , Horia I. Petrache , Steve Pressé

The Internet of Bio-Nano Things (IoBNT), envisioned as a revolutionary healthcare paradigm, shows promise for epidemic control. This paper explores the potential of using molecular communication (MC) to address the challenges in…

网络与互联网体系结构 · 计算机科学 2025-08-07 Xuan Chen , Yu Huang , Miaowen Wen , Shahid Mumtaz , Fatih Gulec , Anwer Al-Dulaimi , Andrew W. Eckford

We present a novel model that describes the within-host evolutionary dynamics of parasites undergoing antigenic variation. The approach uses a multi-type branching process with two types of entities defined according to their relationship…

种群与进化 · 定量生物学 2013-11-18 Gustavo Guerberoff , Fernando Alvarez-Valin

We study how the interplay between the memory immune response and pathogen mutation affects epidemic dynamics in two related models. The first explicitly models pathogen mutation and individual memory immune responses, with contacted…

混沌动力学 · 物理学 2009-11-07 Michelle Girvan , Duncan S. Callaway , M. E. J. Newman , Steven H. Strogatz

Bacterial Vaginosis (BV) affects nearly 23-29% of women worldwide and increases risk of miscarriage, preterm birth, and sexually transmitted infections. It involves a shift in the vaginal microbiome from Lactobacillus dominance to a diverse…

应用统计 · 统计学 2025-07-29 Debarghya Nandi , Soumya Sahu , Supriya Mehta , Dulal K. Bhaumik

Present attack methods can make state-of-the-art classification systems based on deep neural networks misclassify every adversarially modified test example. The design of general defense strategies against a wide range of such attacks still…

机器学习 · 计算机科学 2019-08-06 Sailik Sengupta , Tathagata Chakraborti , Subbarao Kambhampati

Stochasticity and spatial heterogeneity are of great interest recently in studying the spread of an infectious disease. The presented method solves an inverse problem to discover the effectively decisive topology of a heterogeneous network…

人工智能 · 计算机科学 2015-03-13 Yoshiharu Maeno

Microtubules (MTs) are cytoplasmic protein polymers that are essential for fundamental cellular processes including the maintenance of cell shape, organelle transport and formation of the mitotic spindle. Microtubule dynamic instability is…

生物大分子 · 定量生物学 2014-04-09 Chunlei Li , Jun Li , Holly V. Goodson , Mark S. Alber

Magnetotactic bacteria (MTB) are a diverse group of microorganisms that are able to biomineralize magnetic nanoparticles. Most MTB remain uncultured, making population-level characterization from natural environments difficult. We report…

While most studies emphasize on certain aspects of Pathogen-Host Interactions (PHI), such as the preferential attachment of bacteria or virus to its human receptor homolog, studies have attempted to methodically classify interactions among…

分子网络 · 定量生物学 2016-09-13 S. Chatterjee , B. S. Sanjeev
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