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The density of mitotic figures within tumor tissue is known to be highly correlated with tumor proliferation and thus is an important marker in tumor grading. Recognition of mitotic figures by pathologists is known to be subject to a strong…

During tissue invasion individual tumor cells exhibit two interconvertible migration modes, namely mesenchymal and amoeboid migration. The cellular microenvironment triggers the switch between both modes, thereby allowing adaptation to…

组织与器官 · 定量生物学 2017-04-03 Katrin Talkenberger , Elisabetta Ada Cavalcanti-Adamda , Andreas Deutsch , Anja Voss-Böhme

Tumor mutational burden (TMB) is a potential genomic biomarker of immunotherapy. However, TMB detected through whole exome sequencing lacks clinical penetration in low-resource settings. In this study, we proposed a multi-scale deep…

计算机视觉与模式识别 · 计算机科学 2023-05-30 Siteng Chen , Jinxi Xiang , Xiyue Wang , Jun Zhang , Sen Yang , Junzhou Huang , Wei Yang , Junhua Zheng , Xiao Han

Since the discovery of a cancer initiating side population in solid tumours, studies focussing on the role of so-called cancer stem cells in cancer initiation and progression have abounded. The biological interrogation of these cells has…

组织与器官 · 定量生物学 2013-08-22 Jacob G. Scott , Prakash Chinnaiyan , Alexander R. A. Anderson , Anita Hjelmeland , David Basanta

Many events in the vertebrate immune system are influenced by some element of chance. The objective of the present work is to describe affinity maturation of B lymphocytes (in which random events are perhaps the most characteristic), and to…

分子网络 · 定量生物学 2015-05-05 Tamás Szabados , Gábor Tusnády , László Varga , Tibor Bakács

In eukaryotic cells, mitochondria form networks that range from highly fused interconnected structures to fragmented populations of individual organelles that undergo transient interactions. These structures can be described as temporal…

生物物理 · 物理学 2026-02-24 Keaton B. Holt , Camryn Zurita , Lizzy Teryoshin , Samantha C. Lewis , Elena F. Koslover

The spatial structure of populations is a key element in the understanding of the large scale spreading of epidemics. Motivated by the recent empirical evidence on the heterogeneous properties of transportation and commuting patterns among…

种群与进化 · 定量生物学 2008-03-19 Vittoria Colizza , Alessandro Vespignani

Motility is a fundamental survival strategy of bacteria to navigate porous environments. Swimming cells thrive in quiescent wetlands and sediments at the bottom of the marine water column, where they mediate many essential biogeochemical…

软凝聚态物质 · 物理学 2022-01-11 Amin Dehkharghani , Nicolas Waisbord , Jeffrey S. Guasto

Morphogenetic dynamics of tissue sheets require coordinated cell shape changes regulated by global patterning of mechanical forces. Inspired by such biological phenomena, we propose a minimal mechanochemical model based on the notion that…

软凝聚态物质 · 物理学 2021-01-01 Andrei Zakharov , Kinjal Dasbiswas

We present a systematic study of the influence of cell geometry on the orientational distribution of microtubules (MTs) nucleated from a single microtubule organizing center (MTOC). For simplicity we consider an elliptical cell geometry, a…

生物大分子 · 定量生物学 2022-11-30 Panayiotis Foteinopoulos , Bela M. Mulder

Tuberculosis is a deadly infectious disease prevalent around the world. Due to the lack of proper technology in place, the early detection of this disease is unattainable. Also, the available methods to detect Tuberculosis is not up-to a…

计算机视觉与模式识别 · 计算机科学 2019-02-26 Ram Srivatsav Ghorakavi

Tuberculosis (TB) is a contagious bacterial airborne disease, and is one of the top 10 causes of death worldwide. According to the World Health Organization (WHO), around 1.8 billion people are infected with TB and 1.6 million deaths were…

图像与视频处理 · 电气工程与系统科学 2020-12-29 Chirath Dasanayakaa , Maheshi Buddhinee Dissanayake

The functions and elasticities of the cell are largely related to the structures of the cytoskeletons underlying the lipid bi-layer. Among various cell types, the Red Blood Cell (RBC) possesses a relatively simple cytoskeletal structure.…

生物物理 · 物理学 2016-01-20 Lipeng Lai , Xiaofeng Xu , Chwee Teck Lim , Jianshu Cao

Biological cells sense and respond to mechanical forces, but how such a mechanosensing proccess takes place in a nonlinear inhomogeneous fibrous matrix remains unknown. We show that cells in a fibrous matrix induce deformation fields that…

We study a minimal stochastic individual-based model for a microbial population challenged by a persistent (lytic) virus epidemic. We focus on the situation in which the resident microbial host population and the virus population are in…

概率论 · 数学 2025-11-24 Jochen Blath , András Tóbiás

Viruses are submicroscopic agents that can infect all kinds of lifeforms and use their hosts' living cells to replicate themselves. Despite having some of the simplest genetic structures among all living beings, viruses are highly…

计算机视觉与模式识别 · 计算机科学 2024-05-27 Niloy Sikder , Md. Al-Masrur Khan , Anupam Kumar Bairagi , Mehedi Masud , Jun Jiat Tiang , Abdullah-Al Nahid

Electrochemical gradient of protons, or proton motive force (PMF), is at the basis of bacterial energetics. It powers vital cellular processes and defines the physiological state of the cell. Here we use an electric circuit analogy of an…

生物物理 · 物理学 2019-07-24 Ekaterina Krasnopeeva , Chien-Jung Lo , Teuta Pilizota

Cancer cell migration between different body parts is the driving force behind cancer metastasis, which is the main cause of mortality of patients. Migration of cancer cells often proceeds by penetration through narrow cavities in locally…

细胞行为 · 定量生物学 2023-05-02 Qiyao Peng , Fred J Vermolen , Daphne Weihs

This paper describes an investigation into part of the mechanical mechanisms underlying the formation of mitotic spindle, the cellular machinery responsible for chromosomal separation during cell division. In normal eukaryotic cells,…

亚细胞过程 · 定量生物学 2019-05-29 Samira Masoudi , Cameron H. G. Wright , Jesse C. Gatlin , John. S. Oakey

Master equations provide researchers with the ability to track the distribution over possible states of a system. From these equations, we can summarize the temporal dynamics through a method of moments. These distributions and their…

种群与进化 · 定量生物学 2024-08-13 Mariah C. Boudreau , Jamie A. Cohen , Laurent Hébert-Dufresne