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We study general linear transport-reaction systems on an arbitrary dimensional hypercube with periodic boundary conditions. Transport-reaction systems are often used to model the finite speed movement and interaction of particles, bacteria…

偏微分方程分析 · 数学 2022-10-04 Benedikt Geiger

We study coupled mass transport in a tumor--microenvironment setting with two motile densities $(S,R)$ and non-motile state switching $(P,A)$. The populations diffuse and undergo chemotactic drift; $(P,A)$ follow pointwise ODE switching. A…

偏微分方程分析 · 数学 2026-01-29 Jiguang Yu , Louis Shuo Wang , Zonghao Liu , Jingfeng Liu

A common feature of biological self-organization is how active agents communicate with each other or their environment via chemical signaling. Such communications, mediated by self-generated chemical gradients, have consequences for both…

The classical macroscopic chemotaxis equations have previously been derived from an individual-based description of the tactic response of cells that use a "run-and-tumble" strategy in response to environmental cues. Here we derive…

细胞行为 · 定量生物学 2007-05-23 Radek Erban , Hans G. Othmer

Active navigation in disordered media depends on a biased random walk interacting with environmental constraints. Using E. coli chemotactic navigation in agar gels as a model system, we reveal a fundamental trade-off between diffusive…

软凝聚态物质 · 物理学 2025-12-23 Yang Bai , Caiyun He , Weirong Liu , Songtao Cheng , Pan Chu , Liang Luo , Chenli Liu , Xiongfei Fu

Ants are known to be able to find paths of minimal length between the nest and food sources. The deposit of pheromones while they search for food and their chemotactical response to them has been proposed as a crucial element in the…

种群与进化 · 定量生物学 2011-03-09 M. Vela-Pérez , M. A. Fontelos , J. J. L. Velázquez

The purpose of this work is the study of \textit{chemotaxis} and how to model it through the equations of Keller-Segel. \textit{Chemotaxis} is a natural process which induces the organisms to direct their movement according to certain…

偏微分方程分析 · 数学 2021-11-24 Alejandro Fernández-Jiménez

We study a modified version of an initial-boundary value problem describing the formation of colony patterns of bacteria \textit{Escherichia Coli}. The original system of three parabolic equations was studied numerically and analytically…

偏微分方程分析 · 数学 2020-11-03 Danielle Hilhorst , Pierre Roux

One of simplest examples of navigation found in nature is run-and-tumble chemotaxis. Tumbles reorient cells randomly, and cells can drift toward attractants or away from repellents by biasing the frequency of these events. The post-tumble…

软凝聚态物质 · 物理学 2017-09-14 Julius B. Kirkegaard , Raymond E. Goldstein

Chemotaxis is a fundamental guidance mechanism of cells and organisms, responsible for attracting microbes to food, embryonic cells into developing tissues, immune cells to infection sites, animals towards potential mates, and…

定量方法 · 定量生物学 2018-06-26 K. J. Painter

We present new analytical and numerical results for the elliptic-parabolic system of partial differential equations proposed by Hu and Cai, which models the formation of biological transport networks. The model describes the pressure field…

偏微分方程分析 · 数学 2015-10-14 Jan Haskovec , Peter Markowich , Benoit Perthame , Matthias Schlottbom

Partial differential equation (PDE) models for infectious disease have received renewed interest in recent years. Most models of this type extend classical compartmental formulations with additional terms accounting for spatial dynamics,…

种群与进化 · 定量生物学 2025-04-29 Pierluigi Colli , Gabriela Marinoschi , Elisabetta Rocca , Alex Viguerie

This paper is framed in a series of studies on attraction-repulsion chemotaxis models combining different effects: nonlinear diffusion and sensitivities and logistic sources, for the dynamics of the cell density, and consumption and/or…

偏微分方程分析 · 数学 2023-05-17 Tongxing Li , Silvia Frassu , Giuseppe Viglialoro

We explain some pde2path setups for pattern formation in 1D, 2D and 3D. A focus is on new pde2path functions for branch switching at steady bifurcation points of higher multiplicity, typically due to discrete symmetries, but we also review…

斑图形成与孤子 · 物理学 2020-04-28 Hannes Uecker

Switching interacting particle systems studied in probability theory are the stochastic processes of hopping particles on a lattice made up of slow and fast particles, where the switching between these types of particles occurs randomly at…

统计力学 · 物理学 2024-05-14 Ayana Ezoe , Saori Morimoto , Yuya Tanaka , Makoto Katori , Hiraku Nishimori

Turing patterns can be observed in reaction-diffusion systems where chemical species have different diffusion constants. In recent years, several studies investigated the effects of noise on Turing patterns and showed that the parameter…

计算物理 · 物理学 2013-10-30 Yang Cao , Radek Erban

We show that a simple mechanistic model of spatial dispersal for settling organisms, subject to parameter variability, can generate heavy-tailed radial probability density functions. The movement of organisms in the model consists of a…

种群与进化 · 定量生物学 2025-09-23 Luis F. Gordillo , Priscilla E. Greenwood

A discrete chemotactic predator-prey model is proposed in which the prey secrets a diffusing chemical which is sensed by the predator and vice versa. Two dynamical states corresponding to catching and escaping are identified and it is shown…

种群与进化 · 定量生物学 2015-05-20 Ankush Sengupta , Tobias Kruppa , Hartmut Löwen

We analyze a nonlocal PDE model describing the dynamics of adaptation of a phenotypically structured population, under the effects of mutation and selection, in a changing environment. Previous studies have analyzed the large-time behavior…

偏微分方程分析 · 数学 2020-09-25 Lionel Roques , Florian Patout , Olivier Bonnefon , Guillaume Martin

Collective motion by animal groups is affected by internal interactions, external constraints and the influx of information. A quantitative understanding of how these different factors give rise to different modes of collective motion is,…

生物物理 · 物理学 2021-07-21 Aviram Gelblum , Itai Pinkoviezky , Ehud Fonio , Nir S. Gov , Ofer Feinerman