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Whether comparing networks to each other or to random expectation, measuring dissimilarity is essential to understanding the complex phenomena under study. However, determining the structural dissimilarity between networks is an ill-defined…

社会与信息网络 · 计算机科学 2018-07-26 Leo Torres , Pablo Suarez-Serrato , Tina Eliassi-Rad

Protein molecules can be approximated by discrete polygonal chains of amino acids. Standard topological tools can be applied to the smoothening of the polygons to introduce a topological classification of proteins, for example, using the…

生物大分子 · 定量生物学 2019-03-12 Dmitry Melnikov , Antti J Niemi , Ara Sedrakyan

Geometric, topological and graph theory modeling and analysis of biomolecules are of essential importance in the conceptualization of molecular structure, function, dynamics, and transport. On the one hand, geometric modeling provides…

生物大分子 · 定量生物学 2016-12-07 Kelin Xia , Guo-Wei Wei

Interaction-induced topological systems have attracted a growing interest for their exotic properties going beyond the single-particle picture of topological insulators. In particular, the interplay between strong correlations and finite…

In recent years, the performance of different entanglement indicators obtained directly from tomograms has been assessed in continuous-variable and hybrid quantum systems. In this paper, we carry out this task in the case of spin systems.…

量子物理 · 物理学 2022-05-04 B. Sharmila , V. R. Krithika , Soham Pal , T. S. Mahesh , S. Lakshmibala , V. Balakrishnan

Prediction and discovery of new materials with desired properties are at the forefront of quantum science and technology research. A major bottleneck in this field is the computational resources and time complexity related to finding new…

We consider C*-algebras of finite higher-rank graphs along with their rotational action. We show how the entropy theory of product systems with finite frames applies to identify the phase transitions of the dynamics. We compute the positive…

算子代数 · 数学 2020-01-24 Evgenios T. A. Kakariadis

In this work the topological order at finite temperature in two-dimensional color code is studied. The topological entropy is used to measure the behavior of the topological order. Topological order in color code arises from the colored…

量子物理 · 物理学 2009-07-19 Mehdi Kargarian

A major problem in the study of complex socioeconomic systems is represented by privacy issues$-$that can put severe limitations on the amount of accessible information, forcing to build models on the basis of incomplete knowledge. In this…

The recent extension of permutation entropy and its derivatives to graph signals has opened up new horizons for the analysis of complex, high-dimensional systems evolving on networks. However, these measures are all fundamentally rooted in…

信号处理 · 电气工程与系统科学 2026-04-08 Mei-San Maggie Lei , John Stewart Fabila Carrasco , Javier Escudero

Topological data analysis (TDA), as a relatively recent approach, has demonstrated great potential in capturing the intrinsic and robust structural features of complex data. While persistent homology, as a core tool of TDA, focuses on…

组合数学 · 数学 2025-11-11 Jing-Wen Gao , Yunan He , Jian Liu

In this work, Transition Probability Matrix (TPM) is proposed as a new method for extracting the features of nodes in the graph. The proposed method uses random walks to capture the connectivity structure of a node's close neighborhood. The…

机器学习 · 计算机科学 2023-03-07 Sarmad N. Mohammed , Semra Gündüç

Bond graphs can be used to build thermodynamically-compliant hierarchical models of biomolecular systems. As bond graphs have been widely used to model, analyse and synthesise engineering systems, this paper suggests that they can play the…

分子网络 · 定量生物学 2016-06-06 Peter Gawthrop , Edmund Crampin

Topological entropy measures the number of distinguishable orbits in a dynamical system, thereby quantifying the complexity of chaotic dynamics. One approach to computing topological entropy in a two-dimensional space is to analyze the…

计算物理 · 物理学 2019-04-19 Eric Roberts , Suzanne Sindi , Spencer Smith , Kevin Mitchell

TopoDetect is a Python package that allows the user to investigate if important topological features, such as the Degree of the nodes, their Triangle Count, or their Local Clustering Score, are preserved in the embeddings of graph…

机器学习 · 计算机科学 2021-10-11 Maroun Haddad , Mohamed Bouguessa

Let $\mathcal{P}_G$ be the family of all topologically mixing, but not exact self-maps of a topological graph $G$. It is proved that the infimum of topological entropies of maps from $\mathcal{P}_G$ is bounded from below by $(\log 3/…

动力系统 · 数学 2026-05-13 Grzegorz Harańczyk , Dominik Kwietniak , Piotr Oprocha

We develop intuitive metrics for quantifying complex nucleating systems under confinement. These are shown to arise naturally from the analysis of the topological ring network, and are amenable for use as order parameters for such systems.…

化学物理 · 物理学 2020-04-22 Amrita Goswami , Jayant K. Singh

Following a newly introduced approach by Rasetti and Merelli we investigate the possibility to extract topological information about the space where interacting systems are modelled. From the statistical datum of their observable…

统计力学 · 物理学 2017-03-01 Diego Alberici , Pierluigi Contucci , Emanuele Mingione , Marco Molari

Surface topography governs tribological performance, yet conventional parameters describe either amplitude statistics or spectral content in isolation. We introduce a scale-dependent framework that represents surface height and directional…

信号处理 · 电气工程与系统科学 2026-02-24 Boris Brodmann , Matthias Eifler

In this paper, we derive a simple method for separating topological noise from topological features using a novel measure for comparing persistence barcodes called persistent entropy.

信息论 · 计算机科学 2016-05-11 Nieves Atienza , Rocio Gonzalez-Diaz , Matteo Rucco
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