相关论文: Matching Fields in Macaulay2

Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether…

The goal of this paper is to study the link between the topology of the degenerate flag varieties and combinatorics of the Dellac configurations. We define three new classes of algebraic varieties closely related to the degenerate flag…

The Landau-Ginzburg/Conformal Field Theory correspondence predicts tensor equivalences between categories of matrix factorisations of certain polynomials and categories associated to the $N=2$ supersymmetric conformal field theories. We…

Let $T_{m,n}$ be toroidal square grid of size $m\times n$ and let both $m$ and $n$ be even. Let $P$ be a perfect matching of $T_{m,n}$ and let $D(P)$ be the cycle-rooted spanning forest of $P$ obtained by the generalized Temperley's…

In this paper, as a first step toward frame-like gauge invariant formulation for massive mixed symmetry bosonic fields, we consider mixed tensors, corresponding to Young tableau with two rows with k >= 2 boxes in the first row and only one…

We introduce the DeterminantalRepresentations package for Macaulay2, which computes definite symmetric determinantal representations of real polynomials. We focus on quadrics and plane curves of low degree (i.e. cubics and quartics). Our…

In tropical geometry, one studies algebraic curves using combinatorial techniques via the tropicalization procedure. The tropicalization depends on a map to an algebraic torus and the combinatorial methods are most useful when the…

A graph $G$ has the Perfect-Matching-Hamiltonian property (PMH-property) if for each one of its perfect matchings, there is another perfect matching of $G$ such that the union of the two perfect matchings yields a Hamiltonian cycle of $G$.…

We introduce a Macaulay2 package for working with jet schemes. The main method constructs jets of ideals, polynomial rings and their quotients, ring homomorphisms, affine varieties, and (hyper)graphs. The package also includes additional…

In this paper, we introduce the notions of matching matrices in groups and vector spaces, which lead to some necessary conditions for existence of acyclic matching in abelian groups and its linear analogue. We also study the linear local…

{\tt AbstractSimplicialComplexes.m2} is a computer algebra package written for the computer algebra system {\tt Macaulay2} \cite{M2}. It provides new infrastructure to work with abstract simplicial complexes and related homological…

We show that the tropical projective Grassmannian of planes is homeomorphic to a closed subset of the analytic Grassmannian in Berkovich's sense by constructing a continuous section to the tropicalization map. Our main tool is an explicit…

CylindricalAlgebraicDecomposition.m2 is the first implementation of Cylindrical Algebraic Decomposition (CAD) in Macaulay2. CAD decomposes space into 'cells' where input polynomials are sign-invariant. This package computes an Open CAD…

This note describes a Macaulay2 package for handling divisors. Group operations for divisors are included. There are methods for converting divisors to reflexive or invertible sheaves. Additionally, there are methods for checking whether…

We address the correspondence search problem among multiple graphs with complex properties while considering the matching consistency. We describe each pair of graphs by combining multiple attributes, then jointly match them in a unified…

Pattern matching is a powerful tool which is part of many functional programming languages as well as computer algebra systems such as Mathematica. Among the existing systems, Mathematica offers the most expressive pattern matching.…

Numerical algebraic geometry is the field of computational mathematics concerning the numerical solution of polynomial systems of equations. Bertini, a popular software package for computational applications of this field, includes…

We introduce the Brackets package for the computer algebra system Macaulay2, which provides convenient syntax for computations involving the classical invariants of the special linear group. We describe our implementation of bracket rings…

Tropical ideals, introduced in arXiv:1609.03838, define subschemes of tropical toric varieties. We prove that the top-dimensional parts of their varieties are balanced polyhedral complexes of the same dimension as the ideal. This means that…

Baker and Bowler defined a category of algebraic objects called tracts which generalize both partial fields and hyperfields. They also defined a notion of weak and strong matroids over a tract $F$, and proved that if $F$ is perfect, meaning…