相关论文: On DNA Codes Over the Non-Chain Ring $\mathbb{Z}_4…
DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…
We study the amount of reliable information that can be stored in a DNA-based storage system with noisy sequencing, where each codeword is composed of short DNA molecules. We analyze a concatenated coding scheme, where the outer code is…
Using basic properties of p-adic numbers, we consider a simple new approach to describe main aspects of DNA sequence and genetic code. Central role in our investigation plays an ultrametric p-adic information space which basic elements are…
In this paper, we have studied cyclic codes over the ring $R=\mathbb{Z}_4+u\mathbb{Z}_4$, $u^2=0$. We have considered cyclic codes of odd lengths. A sufficient condition for a cyclic code over $R$ to be a $\mathbb{Z}_4$-free module is…
We consider error-correcting coding for deoxyribonucleic acid (DNA)-based storage using nanopore sequencing. We model the DNA storage channel as a sampling noise channel where the input data is chunked into $M$ short DNA strands, which are…
A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis…
The rings $Z_{4}+\nu Z_{4}$ have been classified into chain rings and non-chain rings on the basis of the values of $\nu^{2} \in Z_{4}+\nu Z_{4}.$ In this paper, the structure of cyclic codes of arbitrary length over the rings $Z_{4}+\nu…
Due to its higher data density, longevity, energy efficiency, and ease of generating copies, DNA is considered a promising storage technology for satisfying future needs. However, a diverse set of errors including deletions, insertions,…
DNA based storage systems received attention by many researchers. This includes archival and re-writable random access DNA based storage systems. In this work, we have developed an efficient technique to encode the data into DNA sequence by…
In this paper, an explicit representation and enumeration for negacyclic codes of length $2^kn$ over the local non-principal ideal ring $R=\mathbb{Z}_4+u\mathbb{Z}_4$ $(u^2=0)$ is provided, where $k, n$ are any positive integers and $n$ is…
In recent years, reversible logic has emerged as a promising computing paradigm having its applications in low power computing, quantum computing, nanotechnology, optical computing and DNA computing. The classical set of gates such as AND,…
Error-correcting codes over sets, with applications to DNA storage, are studied. The DNA-storage channel receives a set of sequences, and produces a corrupted version of the set, including sequence loss, symbol substitution, symbol…
We consider the problem of coding for the substring channel, in which information strings are observed only through their (multisets of) substrings. Due to existing DNA sequencing techniques and applications in DNA-based storage systems,…
Nanopore sequencing is a promising technology for DNA sequencing. In this paper, we investigate a specific model of the nanopore sequencer, which takes a $q$-ary sequence of length $n$ as input and outputs a vector of length $n+\ell-1$…
In this paper, we study achievable rates of concatenated coding schemes over a deoxyribonucleic acid (DNA) storage channel. Our channel model incorporates the main features of DNA-based data storage. First, information is stored on many,…
As a medium for cold data storage, DNA stands out as it promises significant gains in storage capacity and lifetime. However, it comes with its own data processing challenges to overcome. Constrained codes over the DNA alphabet…
We provide an overview of current approaches to DNA-based storage system design and accompanying synthesis, sequencing and editing methods. We also introduce and analyze a suite of new constrained coding schemes for both archival and random…
In this paper, we study negacyclic codes of odd length and of length $2^k$ over the ring $R=\mathbb{Z}_4+u\mathbb{Z}_4$, $u^2=0$. We give the complete structure of negacyclic codes for both the cases. We have obtained a minimal spanning set…
Let $q$ be a power of a prime $p$. In this paper, we study reversible cyclic codes of arbitrary length over the ring $ R = \mathbb{F}_q + u \mathbb{F}_q$, where $u^2=0 mod q$. First, we find a unique set of generators for cyclic codes over…
New soft- and hard decision decoding algorithms are presented for general Reed-Muller codes $\left\{\genfrac{}{}{0pt}{}{m}{r}\right\} $ of length $2^{m}$ and distance $2^{m-r}$. We use Plotkin $(u,u+v)$ construction and decompose code…