相关论文: A Near-Linear Kernel for Two-Parsimony Distance

In this paper, we lay the groundwork on the comparison of phylogenetic networks based on edge contractions and expansions as edit operations, as originally proposed by Robinson and Foulds to compare trees. We prove that these operations…

Let $N(d,d^\perp)$ denote the minimum length $n$ of a linear code $C$ with $d$ and $d^{\bot}$, where $d$ is the minimum Hamming distance of $C$ and $d^{\bot}$ is the minimum Hamming distance of $C^{\bot}$. In this paper, we show a lower…

For two t-structures $D_{1}=(D_{1}^{\leqslant 0},D_{1}^{\geqslant 1})$ and $D_{2}=(D_{2}^{\leqslant 0},D_{2}^{\geqslant 1})$ with $D_{1}^{\leqslant 0} \subseteq D_{2}^{\leqslant 0}$ on a triangulated category $\mathcal{D}$, we give a…

In some recent papers the classical `splitting necklace theorem' is linked in an interesting way with a geometric `pattern avoidance problem'. We explore the topological constraints on the existence of a (relaxed) measurable coloring of R^d…

Optimal transport has been very successful for various machine learning tasks; however, it is known to suffer from the curse of dimensionality. Hence, dimensionality reduction is desirable when applied to high-dimensional data with…

The knapsack problem (KP) is a very famous NP-hard problem in combinatorial optimization. Also its generalization to multiple dimensions named d-dimensional knapsack problem (d-KP) and to multiple knapsacks named multiple knapsack problem…

Let P_1 and P_2 be two sets of points in the plane, so that P_1 is contained in a line L_1, P_2 is contained in a line L_2, and L_1 and L_2 are neither parallel nor orthogonal. Then the number of distinct distances determined by the pairs…

An $[n,k,d]$ linear code is said to be maximum distance separable (MDS) or almost maximum distance separable (AMDS) if $d=n-k+1$ or $d=n-k$, respectively. If a code and its dual code are both AMDS, then the code is said to be near maximum…

Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

Given two disjoint sets $W_1$ and $W_2$ of points in the plane, the Optimal Discretization problem asks for the minimum size of a family of horizontal and vertical lines that separate $W_1$ from $W_2$, that is, in every region into which…

The problem of comparing trees representing the evolutionary histories of cancerous tumors has turned out to be crucial, since there is a variety of different methods which typically infer multiple possible trees. A departure from the…

Models like support vector machines or Gaussian process regression often require positive semi-definite kernels. These kernels may be based on distance functions. While definiteness is proven for common distances and kernels, a proof for a…

It has remained an open question for some time whether, given a set of not necessarily binary (i.e. "nonbinary") trees T on a set of taxa X, it is possible to determine in time f(r).poly(m) whether there exists a phylogenetic network that…

We study d-variate approximation problems in the average case setting with respect to a zero-mean Gaussian measure. Our interest is focused on measures having a structure of non-homogeneous linear tensor product, where covariance kernel is…

A conjecture of Bandelt and Dress states that the maximum quartet distance between any two phylogenetic trees on $n$ leaves is at most $(\frac 23 +o(1))\binom{n}{4}$. Using the machinery of flag algebras we improve the currently known…

Given a set of $n$ points $P$ in the plane, each colored with one of the $t$ given colors, a color-spanning set $S\subset P$ is a subset of $t$ points with distinct colors. The minimum diameter color-spanning set (MDCS) is a color-spanning…

We use a suitable version of the so-called "kernel trick" to devise two-sample (homogeneity) tests, especially focussed on high-dimensional and functional data. Our proposal entails a simplification related to the important practical…

How do phylogenetic reconstruction algorithms go astray when they return incorrect trees? This simple question has not been answered in detail, even for maximum parsimony (MP), the simplest phylogenetic criterion. Understanding MP has…

This paper studies randomized polynomial kernelization for the weighted $d$-matroid intersection problem. While the problem is known to have a kernel of size $O(d^{(k - 1)d})$ where $k$ is the solution size, the existence of a polynomial…

We study bounded deviation of non-deterministic finite transducers under the Hamming distance: the bounded comparison problem asks, given two transducers and $k \in \mathbb{N}$, whether for every input the two transducers produce words at…