相关论文: A Near-Linear Kernel for Two-Parsimony Distance

The presence of reticulate evolutionary events in phylogenies turn phylogenetic trees into phylogenetic networks. These events imply in particular that there may exist multiple evolutionary paths from a non-extant species to an extant one,…

We present a geometric formulation of the Multiple Kernel Learning (MKL) problem. To do so, we reinterpret the problem of learning kernel weights as searching for a kernel that maximizes the minimum (kernel) distance between two convex…

We study the Bergman determinantal point process from a theoretical point of view motivated by its simulation. We construct restricted and restricted-truncated variants of the Bergman kernel and show optimal transport inequalities involving…

If we are given $n$ random points in the hypercube $[0,1]^d$, then the minimum length of a Traveling Salesperson Tour through the points, the minimum length of a spanning tree, and the minimum length of a matching, etc., are known to be…

Consider the point line-geometry ${\mathcal P}_t(n,k)$ having as points all the $[n,k]$-linear codes having minimum dual distance at least $t+1$ and where two points $X$ and $Y$ are collinear whenever $X\cap Y$ is a $[n,k-1]$-linear code…

Given $M \geq 2$ distributions defined on a general measurable space, we introduce a nonparametric (kernel) measure of multi-sample dissimilarity (KMD) -- a parameter that quantifies the difference between the $M$ distributions. The…

The Maximum Betweenness Centrality problem (MBC) can be defined as follows. Given a graph find a $k$-element node set $C$ that maximizes the probability of detecting communication between a pair of nodes $s$ and $t$ chosen uniformly at…

There are multiple factors which can cause the phylogenetic inference process to produce two or more conflicting hypotheses of the evolutionary history of a set X of biological entities. That is: phylogenetic trees with the same set of leaf…

We prove sharp two-sided bounds of the fundamental solution for an integro-differential operator of order $\alpha \in (0,2)$ that generates a $d$-dimensional Markov process. The corresponding Dirichlet form is comparable to that of $d$…

T2K is a neutrino oscillation experiment with a 295 km long baseline between the far detector, Super-Kamiokande, and a suite of near detectors to study $\nu_\mu/\bar{\nu}_\mu$ disappearance and $\nu_e/\bar{\nu}_e$ appearance in a…

Phylogenetic reconciliation seeks to explain host-symbiont co-evolution by mapping parasite trees onto host trees through events such as cospeciation, duplication, host switching, and loss. Finding an optimal reconciliation that ensures…

Let $T$ be an arbitrary phylogenetic tree with $n$ leaves. It is well-known that the average quartet distance between two assignments of taxa to the leaves of $T$ is $\frac 23 \binom{n}{4}$. However, a longstanding conjecture of Bandelt and…

Empirical observation of high dimensional phenomena, such as the double descent behaviour, has attracted a lot of interest in understanding classical techniques such as kernel methods, and their implications to explain generalization…

A permutation array(or code) of length $n$ and distance $d$, denoted by $(n,d)$ PA, is a set of permutations $C$ from some fixed set of $n$ elements such that the Hamming distance between distinct members $\mathbf{x},\mathbf{y}\in C$ is at…

We study the closeness of an experimental unitary bosonic network with only partially indistinguishable bosons in an arbitrary mixed input state, in particular an experimental realization of the Boson Sampling, to the ideal bosonic network,…

In phylogenetic studies, biologists often wish to estimate the ancestral discrete character state at an interior vertex $v$ of an evolutionary tree $T$ from the states that are observed at the leaves of the tree. A simple and fast…

The exactly solvable model of two indistinguishable quantum particles (bosons or fermions) confined in a one-dimensional harmonic trap and interacting via finite-range soft-core interaction is presented and many properties of the system are…

Analyzing the sub-level sets of the distance to a compact sub-manifold of R d is a common method in TDA to understand its topology. The distance to measure (DTM) was introduced by Chazal, Cohen-Steiner and M{\'e}rigot in [7] to face the…

This paper presents compact, symmetric, and high-order finite difference methods (FDMs) for the variable Poisson equation on a $d$-dimensional hypercube. Our scheme produces a symmetric linear system: an important property that does not…

We establish quantitative rates of convergence for the empirical estimation of probability measures by means of the Maximum Mean Discrepancy (MMD) with power kernel $K_q(x,y) = -|x-y|^q$, $q \in (0,2)$. The resulting discrepancy is the…