相关论文: Rowmotion on rooted trees
Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here the rooted triple and quartet metrizations are introduced, and applied to formulate novel fast methods of…
Measures of tree balance play an important role in various research areas, for example in phylogenetics. There they are for instance used to test whether an observed phylogenetic tree differs significantly from a tree generated by the Yule…
In this paper we prove that the Scott topology $\mathfrak S$ on a rooted non-metric tree $\mathcal T$ is strictly coarser than the weak tree topology. Moreover, for each $t\in \mathcal T$, we consider a natural order $\preceq_t$ on…
A well known result in the analysis of finite metric spaces due to Gromov says that given any $(X,d_X)$ there exists a \emph{tree metric} $t_X$ on $X$ such that $\|d_X-t_X\|_\infty$ is bounded above by twice $\mathrm{hyp}(X)\cdot…
The shrinking operation converts a hypergraph into a graph by choosing, from each hyperedge, two endvertices of a corresponding graph edge. A hypertree is a hypergraph which can be shrunk to a tree on the same vertex set. Klimo\v{s}ov\'{a}…
Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…
One of the most challenging problems in polymer physics is providing a theoretical description for the behaviour of rings in dense solutions and melts. Although it is nowadays well established that the overall size of a ring in these…
The Fon-Der-Flaass action partitions the order ideals of a poset into disjoint orbits. For a product of two chains, Propp and Roby observed --- across orbits --- the mean cardinality of the order ideals within an orbit to be invariant. That…
Let T be a rooted tree and Iso(T) be the group of isometries of T. Using model-theoretic tools we study closed subgroups G of Iso(T) with respect to the number of conjugacy classes of Iso(T) having representatives in G.
Starting from the data of an arbor, which is a rooted tree with vertices decorated by disjoint sets, we introduce a lattice polytope and a partial order on its lattice points. We give recursive algorithms for various classical invariants of…
The Poisson boundary of a finite direct product of affine automorphism groups of homogeneous trees is considered. The Poisson boundary is shown to be a product of ends of trees with a hitting measure for spread-out, aperiodic measures of…
The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
Treemaps are a popular technique to visualize hierarchical data. The input is a weighted tree $\tree$ where the weight of each node is the sum of the weights of its children. A treemap for $\tree$ is a hierarchical partition of a rectangle…
Metrics on rooted phylogenetic trees are integral to a number of areas of phylogenetic analysis. Cluster-similarity metrics have recently been introduced in order to limit skew in the distribution of distances, and to ensure that trees in…
We study the construction of the minimum cost spanning geometric graph of a given rooted point set $P$ where each point of $P$ is connected to the root by a path that satisfies a given property. We focus on two properties, namely the…
The aim of this note is to extend the result of Angel and Holroyd concerning the transience and the recurrence of transfinite rotor-router walks, for random initial configuration of rotors on homogeneous trees. We address the same question…
The Tree Decomposition Conjecture by Bar\'at and Thomassen states that for every tree $T$ there exists a natural number $k(T)$ such that the following holds: If $G$ is a $k(T)$-edge-connected simple graph with size divisible by the size of…
A cycle basis in an undirected graph is a minimal set of simple cycles whose symmetric differences include all Eulerian subgraphs of the given graph. We define a rooted cycle basis to be a cycle basis in which all cycles contain a specified…
The recursive and hierarchical structure of full rooted trees is applicable to represent statistical models in various areas, such as data compression, image processing, and machine learning. In most of these cases, the full rooted tree is…