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Rich, spontaneous brain activity has been observed across a range of different temporal and spatial scales. These dynamics are thought to be important t for efficient neural functioning. Experimental evidence suggests that these neural…

神经元与认知 · 定量生物学 2015-01-21 Peter J. Hellyer , Barbara Jachs , Robert Leech , Claudia Clopath

Plasticity, the ability of a neural network to quickly change its predictions in response to new information, is essential for the adaptability and robustness of deep reinforcement learning systems. Deep neural networks are known to lose…

机器学习 · 计算机科学 2023-11-28 Clare Lyle , Zeyu Zheng , Evgenii Nikishin , Bernardo Avila Pires , Razvan Pascanu , Will Dabney

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However,…

种群与进化 · 定量生物学 2016-09-23 Jaime Ashander , Luis-Miguel Chevin , Marissa L. Baskett

If two species exhibit different nonlinear responses to a single shared resource, and if each species modifies the resource dynamics such that this favors its competitor, they may stably coexist. This coexistence mechanism, known as…

种群与进化 · 定量生物学 2015-06-16 Florian Hartig , Tamara Münkemüller , Karin Johst , Ulf Dieckmann

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

统计力学 · 物理学 2009-09-30 Zoran Levnajić

Genetic regulation is a key component in development, but a clear understanding of the structure and dynamics of genetic networks is not yet at hand. In this work we investigate these properties within an artificial genome model originally…

分子网络 · 定量生物学 2008-05-01 Thimo Rohlf , Chris Winkler

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

分子网络 · 定量生物学 2009-11-13 Jiankui He , Jun Sun , Michael W. Deem

Genetic regulatory networks (GRNs) have been widely studied, yet there is a lack of understanding with regards to the final size and properties of these networks, mainly due to no network currently being complete. In this study, we analyzed…

分子网络 · 定量生物学 2019-03-13 Adrian I. Campos-González , Julio A. Freyre-González

The dynamics of local cortical networks are irregular, but correlated. Dynamic excitatory--inhibitory balance is a plausible mechanism that generates such irregular activity, but it remains unclear how balance is achieved and maintained in…

神经元与认知 · 定量生物学 2020-04-28 Alan Eric Akil , Robert Rosenbaum , Krešimir Josić

Reconstruction of gene regulatory networks is the process of identifying gene dependency from gene expression profile through some computation techniques. In our human body, though all cells pose similar genetic material but the activation…

A fundamental aspect of learning in biological neural networks is the plasticity property which allows them to modify their configurations during their lifetime. Hebbian learning is a biologically plausible mechanism for modeling the…

神经与进化计算 · 计算机科学 2021-03-16 Anil Yaman , Giovanni Iacca , Decebal Constantin Mocanu , Matt Coler , George Fletcher , Mykola Pechenizkiy

Robustness, the ability of a system to maintain performance under significant and unanticipated environmental changes, is a critical property for robotic systems. While biological systems naturally exhibit robustness, there is no…

机器人学 · 计算机科学 2024-08-20 Xing Li , Oussama Zenkri , Adrian Pfisterer , Oliver Brock

Robustness of spatial pattern against perturbations is an indispensable property of developmental processes for organisms, which need to adapt to changing environments. Although specific mechanisms for this robustness have been extensively…

适应与自组织系统 · 物理学 2017-04-05 Tetsuhiro S. Hatakeyama , Kunihiko Kaneko

Many organisms live in populations structured by space and by class, exhibit plastic responses to their social partners, and are subject to non-additive ecological and fitness effects. Social evolution theory has long recognized that all of…

种群与进化 · 定量生物学 2014-04-24 Jeremy Van Cleve , Erol Akçay

Robustness to mutations and noise has been shown to evolve through stabilizing selection for optimal phenotypes in model gene regulatory networks. The ability to evolve robust mutants is known to depend on the network architecture. How do…

分子网络 · 定量生物学 2008-07-07 Volkan Sevim , Per Arne Rikvold

Although species longevity is subject to a diverse range of selective forces, the mortality curves of a wide variety of organisms are rather similar. We argue that aging and its universal characteristics may have evolved by means of a…

种群与进化 · 定量生物学 2013-02-01 Dervis Can Vural , Greg Morrison , L. Mahadevan

The past decade has witnessed the development and success of coarse-grained network models of proteins for predicting many equilibrium properties related to collective modes of motion. Curiously, the results are usually robust towards the…

分子网络 · 定量生物学 2008-09-23 Canan Atilgan , Ibrahim Inanc , Ali Rana Atilgan

Understanding the relationship between spontaneous stochastic fluctuations and the topology of the underlying gene regulatory network is of fundamental importance for the study of single-cell stochastic gene expression. Here by solving the…

分子网络 · 定量生物学 2017-10-25 Chen Jia , Peng Xie , Min Chen , Michael Q. Zhang

Phenotype of biological systems needs to be robust against mutation in order to sustain themselves between generations. On the other hand, phenotype of an individual also needs to be robust against fluctuations of both internal and external…

种群与进化 · 定量生物学 2015-06-26 Kunihiko Kaneko

Live cells have ambiguous mechanical properties. They were often described as either elastic solids or viscoelastic fluids and have recently been classified as soft glassy materials characterized by weak power-law rheology. Nonlinear…

软凝聚态物质 · 物理学 2013-05-30 Lars Wolff , Klaus Kroy