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Breakage-Fusion-Bridge cycles in cancer arise when a broken segment of DNA is duplicated and an end from each copy joined together. This structure then `unfolds' into a new piece of palindromic DNA. This is one mechanism responsible for the…

基因组学 · 定量生物学 2012-11-13 CD Greenman , SL Cooke , J Marshall , MR Stratton , PJ Campbell

Accumulating evidence suggests that many tumors have a hierarchical organization, with the bulk of the tumor composed of relatively differentiated short-lived progenitor cells that are maintained by a small population of undifferentiated…

种群与进化 · 定量生物学 2015-06-17 Alexandra Jilkine , Ryan N. Gutenkunst

We consider a multistage cancer model in which cells are arranged in a $d$-dimensional integer lattice. Starting with all wild-type cells, we prove results about the distribution of the first time when two neutral mutations have accumulated…

概率论 · 数学 2015-01-20 Richard Durrett , Stephen Moseley

Cancer invasion of the surrounding tissue is a multiscale process that involves not only tumour cells but also other immune cells in the environment, such as the tumour-associated macrophages (TAMs). The heterogeneity of these immune cells,…

动力系统 · 数学 2021-03-08 Szabolcs Suveges , Raluca Eftimie , Dumitru Trucu

Research into somatic mutations in cancer cell DNA and their role in tumour growth and progression between successive stages is crucial for improving our understanding of cancer evolution. Mathematical and computer modelling can provide…

种群与进化 · 定量生物学 2024-02-26 Andrzej Polanski , Mateusz Kania , Jarosław Gil , Wojciech Łabaj , Ewa Lach , Agnieszka Szczęsna

Complex tumor-host interactions can significantly affect the growth dynamics and morphologies of progressing neoplasms. The growth of a confined solid tumor induces mechanical pressure and deformation of the surrounding microenvironment,…

生物物理 · 物理学 2012-01-05 Yang Jiao , Sal Torquato

With the advance of imaging technology, digital pathology imaging of tumor tissue slides is becoming a routine clinical procedure for cancer diagnosis. This process produces massive imaging data that capture histological details in high…

统计方法学 · 统计学 2020-12-10 Qiwei Li , Xinlei Wang , Faming Liang , Guanghua Xiao

We propose a statistical framework to integrate radiological magnetic resonance imaging (MRI) and genomic data to identify the underlying radiogenomic associations in lower grade gliomas (LGG). We devise a novel imaging phenotype by…

We present a three-stage probabilistic model for the progression of Chronic Myeloid Leukemia (CML), as manifested by the leukemic stem cells, progenitor cells and mature leukemic cells. This progression is captured through the process of…

种群与进化 · 定量生物学 2022-04-25 Sonjoy Pan , Siddhartha P. Chakrabarty , Soumyendu Raha

Skin cancer is the most common human malignancy(American Cancer Society) which is primarily diagnosed visually, starting with an initial clinical screening and followed potentially by dermoscopic(related to skin) analysis, a biopsy and…

图像与视频处理 · 电气工程与系统科学 2022-02-03 Kartikeya Agarwal , Tismeet Singh

From a systems biology perspective the majority of cancer models, although interesting and providing a qualitative explanation of some problems, have a major disadvantage in that they usually miss a genuine connection with experimental…

We study large deviation events in the timing of disease recurrence. In particular, we are interested in modeling cancer treatment failure due to mutation-induced drug resistance. We first present a two-type branching process model of this…

概率论 · 数学 2021-08-06 Pranav Hanagal , Kevin Leder , Zicheng Wang

This paper investigates cells proliferation dynamics in small tumor cell aggregates using an individual based model (IBM). The simulation model is designed to study the morphology of the cell population and of the cell lineages as well as…

We present multiscale models of cancer tumor invasion with components at the molecular, cellular, and tissue levels. We provide biological justifications for the model components, present computational results from the model, and discuss…

定量方法 · 定量生物学 2023-02-14 Bruce P. Ayati , Glenn F. Webb , Alexander R. A. Anderson

In this paper, a two-dimensional model for the growth of multi-layer tumors is presented. The model consists of a free boundary problem for the tumor cell membrane and the tumor is supposed to grow or shrink due to cell proliferation or…

偏微分方程分析 · 数学 2013-06-11 Martin Kohlmann

Aberrantly regulated cell motility is a hallmark of cancer cells. A hybrid agent-based model has been developed to investigate the synergistic and antagonistic cell motility-impacting effects of three microenvironment variables…

细胞行为 · 定量生物学 2008-06-26 L. Leon Chen , Le Zhang , Jeongah Yoon , Thomas S. Deisboeck

During the last decades, medical observations and multiscale data concerning tumor growth are mounting. At the same time, contemporary imaging techniques well established in clinical practice, provide a variety of information on real-time,…

组织与器官 · 定量生物学 2017-12-11 Markos Antonopoulos , Georgios Stamatakos

The goal of cancer genome sequencing projects is to determine the genetic alterations that cause common cancers. Many malignancies arise during the clonal expansion of a benign tumor which motivates the study of recurrent selective sweeps…

概率论 · 数学 2015-03-13 Rick Durrett , John Mayberry

Cancer is an epidemic worldwide. At present one in four persons has cancer and this statistic will change to one in a two person in the near future. It is now known that war against cancer is the early, curable detection and treatment.…

组织与器官 · 定量生物学 2017-10-03 Shiva Bhandari , Sri Choudannavar , Ethan Avery , Peeyush Sahay , Prabhakar Pradhan

It is increasingly common clinically for cancer specimens to be examined using techniques that identify somatic mutations. In principle these mutational profiles can be used to diagnose the tissue of origin, a critical task for the 3-5% of…

统计方法学 · 统计学 2020-07-14 Saptarshi Chakraborty , Colin B. Begg , Ronglai Shen