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Including intricate topological information (e.g., cycles) provably enhances the expressivity of message-passing graph neural networks (GNNs) beyond the Weisfeiler-Leman (WL) hierarchy. Consequently, Persistent Homology (PH) methods are…

机器学习 · 计算机科学 2026-02-05 Mattie Ji , Amauri H. Souza , Vikas Garg

We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

代数拓扑 · 数学 2020-07-31 Padraig Corcoran

Persistent homology is a tool from Topological Data Analysis (TDA) used to summarize the topology underlying data. It can be conveniently represented through persistence diagrams. Observing a noisy signal, common strategies to infer its…

统计理论 · 数学 2024-08-28 Hugo Henneuse

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

定量方法 · 定量生物学 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

Topological data analysis (TDA) studies the shape patterns of data. Persistent homology is a widely used method in TDA that summarizes homological features of data at multiple scales and stores them in persistence diagrams (PDs). In this…

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

代数拓扑 · 数学 2024-06-05 Vincent P. Grande , Michael T. Schaub

Persistent homology is an effective method for extracting topological information, represented as persistent diagrams, of spatial structure data. Hence it is well-suited for the study of protein structures. Attempts to incorporate…

机器学习 · 计算机科学 2024-08-01 An Wu , Yu Pan , Fuqi Zhou , Jinghui Yan , Chuanlu Liu

Persistent (co)homology is a central construction in topological data analysis, where it is used to quantify prominence of features in data to produce stable descriptors suitable for downstream analysis. Persistence is challenging to…

计算几何 · 计算机科学 2024-10-23 Arnur Nigmetov , Dmitriy Morozov

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

代数拓扑 · 数学 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…

机器学习 · 计算机科学 2021-06-15 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

The Persistent Homology Transform (PHT) summarizes a shape in $\mathbb{R}^m$ by collecting persistence diagrams obtained from linear height filtrations in all directions on $\mathbb{S}^{m-1}$. It enjoys strong theoretical guarantees,…

计算几何 · 计算机科学 2026-04-10 Michael Kerber , Elena Xinyi Wang

Persistent homology is a widely-used tool in topological data analysis (TDA) for understanding the underlying shape of complex data. By constructing a filtration of simplicial complexes from data points, it captures topological features…

代数拓扑 · 数学 2025-10-23 Aleksei Luchinsky , Umar Islambekov

Persistent homology (PH) characterizes the shape of brain networks through persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

Time-series prediction is an active area of research across various fields, often challenged by the fluctuating influence of short-term and long-term factors. In this study, we introduce a feature engineering method that enhances the…

By general case we mean methods able to process simplicial sets and chain complexes not of finite type. A filtration of the object to be studied is the heart of both subjects persistent homology and spectral sequences. In this paper we…

计算几何 · 计算机科学 2014-04-01 Ana Romero , Jónathan Heras , Julio Rubio , Francis Sergeraert

Over the last two decades, topological data analysis (TDA) has emerged as a very powerful data analytic approach which can deal with various data modalities of varying complexities. One of the most commonly used tools in TDA is persistent…

统计方法学 · 统计学 2025-12-08 Anass El Yaagoubi Bourakna , Moo K. Chung , Hernando Ombao

We define persistent homology groups over any set of spaces which have inclusions defined so that the corresponding directed graph between the spaces is acyclic, as well as along any subgraph of this directed graph. This method…

计算几何 · 计算机科学 2019-06-20 Erin Wolf Chambers , David Letscher

Topological methods can provide a way of proposing new metrics and methods of scrutinising data, that otherwise may be overlooked. In this work, a method of quantifying the shape of data, via a topic called topological data analysis will be…

机器学习 · 统计学 2022-09-25 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

The reconstruction of time-dependent Robin coefficients is a challenging inverse heat transfer problem due to its inherent ill-posedness. This paper introduces a hierarchical Bayesian approach integrated with a persistent homology (PH)…

统计计算 · 统计学 2026-04-27 Xiaomei Yang , Jiaying Jia , Zhiliang Deng

Balancing performance and interpretability in multivariate time series classification is a significant challenge due to data complexity and high dimensionality. This paper introduces PHeatPruner, a method integrating persistent homology and…

机器学习 · 计算机科学 2025-04-28 Anh-Duy Pham , Olivier Basole Kashongwe , Martin Atzmueller , Tim Römer