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We study the vertex model for epithelial tissue mechanics extended to include coupling between the cell shapes and tensions in cell-cell junctions. This coupling represents an active force which drives the system out of equilibrium and…

软凝聚态物质 · 物理学 2022-12-22 Jan Rozman , Rastko Sknepnek , Julia M. Yeomans

In this work, a mathematical model of self-oscillatory dynamics of the metabolism in a cell is studied. The full phase-parametric characteristics of variations of the form of attractors depending on the dissipation of a kinetic membrane…

适应与自组织系统 · 物理学 2018-01-17 V. I. Grytsay , I. V. Musatenko

By modifying and calibrating an active vertex model to experiments, we have simulated numerically a confluent cellular monolayer spreading on an empty space and the collision of two monolayers of different cells in an antagonistic migration…

软凝聚态物质 · 物理学 2021-04-02 L. L. Bonilla , A. Carpio , C. Trenado

We demonstrate the emergence of self-organized structures in the course of the relaxation of an initially excited, dissipative and finite chain of interacting particles in a periodic potential towards its many particle equilibrium…

适应与自组织系统 · 物理学 2016-08-19 Benno Liebchen , Peter Schmelcher

The spatial structure of the cell is highly organized at all levels: from small complexes and assemblies, to local nano- and micro-clusters, to global, micrometer scales across and between cells. We suggest that this multiscale spatial cell…

生物大分子 · 定量生物学 2013-08-06 Ruth Nussinov

Bone remodeling is a complex process involving cell-cell interactions, biochemical signaling and mechanical stimuli. Early models of the biological aspects of remodeling were non-spatial and focused on the local dynamics at a fixed location…

种群与进化 · 定量生物学 2016-09-05 Marc D. Ryser , Kevin A. Murgas

The capability of cells to form surface extensions to non-locally probe the surrounding environment plays a key role in cell migration. The existing mathematical models for migration of cell populations driven by this non-local form of…

细胞行为 · 定量生物学 2025-12-24 Tommaso Lorenzi , Nadia Loy , Chiara Villa

Collective cell migration in response to a chemical cue occurs in many biological processes such as morphogenesis and cancer metastasis. Clusters of migratory cells in these systems are capable of responding to gradients of less than 1%…

生物物理 · 物理学 2016-08-24 Julien Varennes , Bumsoo Han , Andrew Mugler

The generation of anisotropic shapes occurs during morphogenesis of almost all organisms. With the recent renewal of the interest in mechanical aspects of morphogenesis, it has become clear that mechanics contributes to anisotropic forms in…

细胞行为 · 定量生物学 2018-04-19 Jean-Daniel Julien , Arezki Boudaoud

Many organisms possess both a cell cycle to control DNA replication and a circadian clock to anticipate changes between day and night. In some cases, these two rhythmic systems are known to be coupled by specific, cross-regulatory…

分子网络 · 定量生物学 2016-04-12 Joris Paijmans , Mark Bosman , Pieter Rein ten Wolde , David K. Lubensky

Collective motion of cells is critical to some of the most vital tasks including wound healing, development, and immune response [Friedl and Gilmour 2009; Tokarski et al. 2012; Lee et al. 2012; Beltman et al. 2009], and is common to many…

细胞行为 · 定量生物学 2014-07-04 Mircea Davidescu , Iain Couzin

Cells perform directed motion in response to external stimuli that they detect by sensing the environment with their membrane protrusions. In particular, several biochemical and biophysical cues give rise to tactic migration in the…

细胞行为 · 定量生物学 2020-07-15 N. Loy , M. Conte

Coordinated motion of cell monolayers during epithelial wound healing and tissue morphogenesis involves mechanical stress generation. Here we propose a model for the dynamics of epithelial expansion that couples mechanical deformations in…

软凝聚态物质 · 物理学 2015-06-09 Shiladitya Banerjee , Kazage J. C. Utuje , M. Cristina Marchetti

A spacially extended model of the collective behavior of a large number of locally acting organisms is proposed in which organisms move probabilistically between local cells in space, but with weights dependent on local morphogenetic…

adap-org · 物理学 2008-06-25 Mark M. Millonas

Shape had been intuitively recognized to play a dominant role in determining the global motion patterns of bio-molecular assemblies. However, it is not clear exactly how shape determines the motion patterns. What about the local…

生物大分子 · 定量生物学 2019-02-12 Guang Song

Cells generally convert nutrient resources to useful products via energy transduction. Accordingly, the thermodynamic efficiency of this conversion process is one of the most essential characteristics of living organisms. However, although…

生物物理 · 物理学 2016-05-04 Yusuke Himeoka , Kunihiko Kaneko

In processes such as embryo shaping, wound healing, and malignant cell invasion, epithelial cells transition between dispersed phases, where the cells move independently, and condensed phases, where they aggregate and deform to close gaps,…

软凝聚态物质 · 物理学 2024-09-25 Anshuman Pasupalak , Zeng Wu , Massimo Pica Ciamarra

Energy transfer plays a vital role in many natural and technological processes. In this work, we study the effects of mechanical motion on the excitation transfer through a chain of interacting molecules with application to biological…

In this paper we use a continuous model to describe the development of a single cell lineage following the committal of stem cells. Three separate controls are implemented in the model, namely the proliferative control of stem cells, the…

组织与器官 · 定量生物学 2007-05-23 Ivana Drobnjak , A. C. Fowler , Michael C. Mackey

The shape of a cell influences and it is influenced by interactions with its neighbouring partners. Here, we introduce a coarse-grained model of non-reciprocal interactions between single-cell organisms to study emergent morphologies during…

软凝聚态物质 · 物理学 2025-06-17 Maitane Muñoz-Basagoiti , Michael Wassermair , Miguel Amaral , Buzz Baum , Anđela Šarić
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