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We consider a size-structured model for cell division and address the question of determining the division (birth) rate from the measured stable size distribution of the population. We formulate such question as an inverse problem for an…

偏微分方程分析 · 数学 2009-11-11 Benoit Perthame , Jorge P. Zubelli

Two-dimensional (2D) mechanical models of confluent tissues have related the mechanical state of a monolayer of cells to the average perimeter length of the cell cross sections, predicting floppiness or rigidity of the material. For the…

软凝聚态物质 · 物理学 2025-01-30 Jairo M. Rojas , Mayisha Z. Nakib , Vivian W. Tang , William M. Brieher , Sascha Hilgenfeldt

We develop a simple computational model for cell boundary evolution in plastic deformation. We study the cell boundary size distribution and cell boundary misorientation distribution that experimentally have been found to have scaling forms…

材料科学 · 物理学 2013-05-29 James P. Sethna , Valerie R. Coffman , Eugene Demler

A first-principles theory is developed for the general evolution of a key structural characteristic of planar granular systems - the cell order distribution. The dynamic equations are constructed and solved in closed form for a number of…

材料科学 · 物理学 2015-05-04 Raphael Blumenfeld

A general theory is developed for the evolution of the cell order (CO) distribution in planar granular systems. Dynamic equations are constructed and solved in closed form for several examples: systems under compression; dilation of very…

软凝聚态物质 · 物理学 2019-09-27 Clara C. Wanjura , Paula Gago , Takashi Matsushima , Raphael Blumenfeld

Modeling the ability of multicellular organisms to build and maintain their bodies through local interactions between individual cells (morphogenesis) is a long-standing challenge of developmental biology. Recently, the Neural Cellular…

神经与进化计算 · 计算机科学 2022-06-02 Alexander Mordvintsev , Ettore Randazzo , Craig Fouts

The purpose of this paper is to study the shapes and stabilities of bio-membranes within the framework of exterior differential forms. After a brief review of the current status in theoretical and experimental studies on the shapes of…

软凝聚态物质 · 物理学 2007-05-23 Z. C. Tu , Z. C. Ou-Yang

We investigate a continuum mechanical model for an adherent cell on two dimensional adhesive micropatterned substrates. The cell is modeled as an isotropic and homogeneous elastic material subject to uniform internal contractile stresses.…

生物物理 · 物理学 2013-12-30 Shiladitya Banerjee , Rastko Sknepnek , M. Cristina Marchetti

An important question in biology is how the relative size of different organs is kept nearly constant during growth of an animal. This property, called proportionate growth, has received increased attention in recent years. We discuss our…

统计力学 · 物理学 2014-11-18 Tridib Sadhu , Deepak Dhar

Leaves and flowers frequently have a characteristic rippling pattern at their edges. Recent experiments found similar patterns in torn plastic. These patterns can be reproduced by imposing metrics upon thin sheets. The goal of this paper is…

软凝聚态物质 · 物理学 2022-10-12 M. Marder

This paper investigates cells proliferation dynamics in small tumor cell aggregates using an individual based model (IBM). The simulation model is designed to study the morphology of the cell population and of the cell lineages as well as…

Organoids are in vitro cellular collectives from which brain-like, or gut-like, or kidney-like structures emerge. To make quantitative predictions regarding the morphology and rheology of a cellular collective in its initial stages of…

软凝聚态物质 · 物理学 2023-01-12 Tao Zhang , J. M. Schwarz

A new method is proposed to divide a spherical surface into equal-area cells. The method is based on dividing a sphere into several latitudinal bands of near-constant span with further division of each band into equal-area cells. It is…

天体物理仪器与方法 · 物理学 2019-05-08 Zinovy Malkin

Aging remains a fundamental open problem in modern biology. Although there exist a number of theories on aging on the cellular scale, nearly nothing is known about how microscopic failures cascade to macroscopic failures of tissues, organs…

组织与器官 · 定量生物学 2017-07-10 Aylin Acun , Dervis Can Vural , Pinar Zorlutuna

State-of-the-art review of cellular automata, cellular automata for partial differential equations, differential equations for cellular automata and pattern formation in biology and engineering.

元胞自动机与格子气 · 物理学 2010-03-11 Xin-She Yang , Y. Young

Impedance Spectroscopy resolves electrical properties into uncorrelated variables, as a function of frequency, with exquisite resolution. Separation is robust and most useful when the system is linear. Impedance spectroscopy combined with…

定量方法 · 定量生物学 2015-11-05 Robert Eisenberg

We view the folding of RNA-sequences as a map that assigns a pattern of base pairings to each sequence, known as secondary structure. These preimages can be constructed as random graphs (i.e. the neutral networks associated to the structure…

adap-org · 物理学 2008-02-03 Christian V. Forst , Christian Reidys , Jacqueline Weber

We present a fiber-distributed model of the reinforcing collagen of the human cornea. The model describes the basic connections between the components of the tissue by defining an elementary block (cell) and upscaling it to the physical…

生物物理 · 物理学 2023-06-28 Maria Laura De Bellis , Marcello Vasta , Alessio Gizzi , Anna Pandolfi

The architecture has its basis in a dialectic search of new choices of representation. We deal with the form on the contemporary architecture under two approaches: expression and content. We examine how mathematical principles based on…

历史与综述 · 数学 2014-06-10 Luisa Consiglieri , Vitor Consiglieri

In this paper we give two different proofs of Bobenko and Springborn's theorem of circle pattern: there exists a hyperbolic (or Euclidean) circle pattern with proscribed intersection angles and cone angles on a cellular decomposed surface…

几何拓扑 · 数学 2008-02-28 Ren Guo