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Cell fate decisions emerge as a consequence of a complex set of gene regulatory networks. Models of these networks are known to have more parameters than data can determine. Recent work, inspired by Waddington's metaphor of a landscape, has…

定量方法 · 定量生物学 2023-05-08 Archishman Raju , Eric D. Siggia

Ordered polarity alignment of a cell population plays a vital role in biology, such as in hair follicle alignment and asymmetric cell division. Here, we propose a theoretical framework for the understanding of generic dynamical properties…

斑图形成与孤子 · 物理学 2016-12-13 Kaori Sugimura , Hiroshi Kori

Over the past decade, many works on the modeling of wireless networks using stochastic geometry have been proposed. Results about probability of coverage, throughput or mean interference, have been provided for a wide variety of networks…

网络与互联网体系结构 · 计算机科学 2016-02-08 Alexandre Mouradian

The asymptotic behaviour of dynamical processes in networks can be expressed as a function of spectral properties of the corresponding adjacency and Laplacian matrices. Although many theoretical results are known for the spectra of…

物理与社会 · 物理学 2018-05-29 Thomas K. DM. Peron , Peng Ji , Jürgen Kurths , Francisco A. Rodrigues

This tutorial is intended as an accessible but rigorous first reference for someone interested in learning how to model and analyze cellular network performance using stochastic geometry. In particular, we focus on computing the…

信息论 · 计算机科学 2016-10-06 Jeffrey G. Andrews , Abhishek K. Gupta , Harpreet S. Dhillon

A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

生物物理 · 物理学 2015-05-30 Makiko Nonomura

Random graph (RG) models play a central role in the complex networks analysis. They help to understand, control, and predict phenomena occurring, for instance, in social networks, biological networks, the Internet, etc. Despite a large…

社会与信息网络 · 计算机科学 2024-03-22 Mikhail Drobyshevskiy , Denis Turdakov

We study the spectral distribution of the threshold network model.The results contain an explicit description and its asymptotic behaviour.

组合数学 · 数学 2010-10-12 Yusuke Ide , Norio Konno , Nobuaki Obata

A new class of probabilistic models for cascading failure propagation in interconnected systems is proposed. The models take into account important characteristics of real systems that are not considered in existing generic approaches.…

无序系统与神经网络 · 物理学 2010-03-31 Jörg Lehmann , Jakob Bernasconi

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

统计力学 · 物理学 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Mathematical models of stem cell differentiation are commonly based upon the concept of subsequent cell fate decisions, each controlled by a gene regulatory network. These networks exhibit a multistable behavior and cause the system to…

定量方法 · 定量生物学 2011-07-06 Christian Breindl , Daniella Schittler , Steffen Waldherr , Frank Allgöwer

Spectral embedding is a procedure which can be used to obtain vector representations of the nodes of a graph. This paper proposes a generalisation of the latent position network model known as the random dot product graph, to allow…

机器学习 · 统计学 2021-11-17 Patrick Rubin-Delanchy , Joshua Cape , Minh Tang , Carey E. Priebe

We introduce a cellular automaton model coupled with a transport equation for flows on graphs. The direction of the flow is described by a switching process where the switching probability dynamically changes according to the value of the…

元胞自动机与格子气 · 物理学 2013-07-02 Pierre Degond , Michael Herty , Jian-Guo Liu

Complex networks of real-world systems are believed to be controlled by common phenomena, producing structures far from regular or random. These include scale-free degree distributions, small-world structure and assortative mixing by…

社会与信息网络 · 计算机科学 2013-05-24 Lovro Šubelj , Marko Bajec

We extend the latent position random graph model to the line graph of a random graph, which is formed by creating a vertex for each edge in the original random graph, and connecting each pair of edges incident to a common vertex in the…

社会与信息网络 · 计算机科学 2024-02-27 Zachary Lubberts , Avanti Athreya , Youngser Park , Carey E. Priebe

Cooperation in cellular networks has been recently suggested as a promising scheme to improve system performance, especially for cell-edge users. In this work, we use stochastic geometry to analyze cooperation models where the positions of…

信息论 · 计算机科学 2015-02-11 Anastasios Giovanidis , Francois Baccelli

For the first time the phenomenon of cellular structure coarsening are consistently analysed from the positions of kinetic, hydrodynamic and stochastodynamic theories of nonequilibrium statistical systems. Thereby micro-, meso- and…

凝聚态物理 · 物理学 2015-06-25 S. B. Goryachev

In this paper we present a network model to study the impact of spatial distribution of constituents, coupling between them and diffusive processes in the context of biological situations. The model is in terms of network of mobile elements…

分子网络 · 定量生物学 2007-05-23 Kanchan Thadani , Ashutosh

One property of networks that has received comparatively little attention is hierarchy, i.e., the property of having vertices that cluster together in groups, which then join to form groups of groups, and so forth, up through all levels of…

物理与社会 · 物理学 2008-04-12 Aaron Clauset , Cristopher Moore , M. E. J. Newman

As complex networks find applications in a growing range of disciplines, the diversity of naturally occurring and model networks being studied is exploding. The adoption of a well-developed collection of network taxonomies is a natural…

组合数学 · 数学 2016-01-25 Ann Sizemore , Chad Giusti , Danielle Bassett