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Over the last two decades, scientific literature has been blooming with various means of simulating epithelial cell colonies. Each of these simulations can be separated by their respective efficiency (expressed in terms of consumed…

计算物理 · 物理学 2022-12-20 Kevin Höllring , Ana-Sunčana Smith

Models of tumor growth, now commonly used, present several levels of complexity, both in terms of the biomedical ingredients and the mathematical description. The simplest ones contain competition for space using purely fluid mechanical…

偏微分方程分析 · 数学 2015-06-12 Benoît Perthame , Fernando Quirós , Juan Luis Vázquez

The evolution of various competing cell types in tissues, and the resulting persistent tissue population, is studied numerically and analytically in a particle-based model of active tissues. Mutations change the properties of cells in…

种群与进化 · 定量生物学 2024-06-03 Tobias Büscher , Nirmalendu Ganai , Gerhard Gompper , Jens Elgeti

Tissue growth underpins a wide array of biological and developmental processes, and numerical modeling of growing systems has been shown to be a useful tool for understanding these processes. However, the phenomena that can be captured are…

软凝聚态物质 · 物理学 2023-11-08 Andrew Killeen , Benjamin Partridge , Thibault Bertrand , Chiu Fan Lee

This work presents a rigorous mathematical formulation for topology optimization of a macrostructure undergoing ductile failure. The prediction of ductile solid materials which exhibit dominant plastic deformation is an intriguingly…

数值分析 · 数学 2023-03-22 Nima Noii , Hassan Ali Jahangiry , Haim Waisman

The level set approach represents surfaces implicitly, and advects them by evolving a level set function, which is numerically defined on an Eulerian grid. Here we present an approach that augments the level set function values by gradient…

数值分析 · 数学 2015-05-13 Jean-Christophe Nave , Rodolfo Ruben Rosales , Benjamin Seibold

We present a model for cell growth, division and packing under soft constraints that arise from the deformability of the cells as well as of a membrane that encloses them. Our treatment falls within the framework of diffuse interface…

细胞行为 · 定量生物学 2019-01-09 J. Jiang , K. Garikipati , S. Rudraraju

We present SCULPT, a novel 3D generative model for clothed and textured 3D meshes of humans. Specifically, we devise a deep neural network that learns to represent the geometry and appearance distribution of clothed human bodies. Training…

计算机视觉与模式识别 · 计算机科学 2024-05-07 Soubhik Sanyal , Partha Ghosh , Jinlong Yang , Michael J. Black , Justus Thies , Timo Bolkart

The buckling of a soft elastic sample under growth or swelling has highlighted a new interest in materials science, morphogenesis, and biology or physiology. Indeed, the change of mass or volume is a common fact of any living species, and…

软凝聚态物质 · 物理学 2023-09-21 Martine Ben Amar

The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…

组织与器官 · 定量生物学 2010-04-27 David A. Young

Growth-elasticity is a powerful model framework for understanding complex shape development in soft biological tissues. At each instant, by mapping how continuum building blocks have grown geometrically and how they respond elastically to…

数值分析 · 数学 2024-10-23 Min Wu

Localized deformation patterns are a common motif in morphogenesis and are increasingly finding widespread applications in materials science, for instance as memory devices. Here we describe the emergence of spatially localized deformations…

The simulation of growth processes within soft biological tissues is of utmost importance for many applications in the medical sector. Within this contribution we propose a new macroscopic approach fro modelling stress-driven volumetric…

计算工程、金融与科学 · 计算机科学 2022-01-21 L. Lamm , H. Holthusen , T. Brepols , S. Jockenhövel , S. Reese

Bone remodeling is a complex process involving cell-cell interactions, biochemical signaling and mechanical stimuli. Early models of the biological aspects of remodeling were non-spatial and focused on the local dynamics at a fixed location…

种群与进化 · 定量生物学 2016-09-05 Marc D. Ryser , Kevin A. Murgas

Textured meshes significantly enhance the realism and detail of objects by mapping intricate texture details onto the geometric structure of 3D models. This advancement is valuable across various applications, including entertainment,…

图形学 · 计算机科学 2024-12-12 Kaiwei Zhang , Dandan Zhu , Xiongkuo Min , Guangtao Zhai

In this paper we address some modelling issues related to biological growth. Our treatment is based on a recently-proposed, general formulation for growth within the context of Mixture Theory (Journal of the Mechanics and Physics of Solids,…

组织与器官 · 定量生物学 2011-11-09 H. Narayanan , E. M. Arruda , K. Grosh , K. Garikipati

We propose a numerical method for solving block-structured mesh partitioning problems based on the variational level-set method of (Zhao et al., J Comput Phys 127, 1996) which has been widely used in many partitioning problems such as image…

计算物理 · 物理学 2018-01-12 Shucheng Pan , Xiangyu Hu , Nikolaus. A. Adams

The importance of molecular-scale forces in sculpting biological form and function has been acknowledged for more than a century. Accounting for forces in biology is a problem that lies at the intersection of soft condensed matter physics,…

软凝聚态物质 · 物理学 2025-12-10 K. Vijay Kumar , Mandar M. Inamdar , Pramod A. Pullarkat , Gautam I. Menon

Lifting is an efficient technique to scale up graphical models generalized to relational domains by exploiting the underlying symmetries. Concurrently, neural models are continuously expanding from grid-like tensor data into structured…

机器学习 · 计算机科学 2021-01-19 Gustav Sourek , Filip Zelezny , Ondrej Kuzelka

The multiplicative decomposition model is widely employed for predicting residual stresses and morphologies of biological tissues due to growth. However, it relies on the assumption that the tissue is initially in a stress-free state, which…

软凝聚态物质 · 物理学 2020-09-04 Yangkun Du , Chaofeng Lü , Weiqiu Chen , Michel Destrade