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A self-organization is an universal phenomenon in nature and, in particular, is highly important in materials systems and biology. We proposed a new theory that allowed us to model the most challenging cases of atomic self-assembling whose…

其他凝聚态物理 · 物理学 2014-11-25 M. Lavrskyi , H. Zapolsky , A. G. Khachaturyan

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

计算复杂性 · 计算机科学 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

We investigate modified Sierpi\'nski Carpet fractals, constructed by dividing a square into a square $n \times n$ grid, removing a subset of the squares at each step, and then repeating that process for each square remaining in that grid.…

动力系统 · 数学 2026-04-06 Jade Leathrum

In the abstract Tile Assembly Model, self-assembling systems consisting of tiles of different colors can form structures on which colored patterns are ``painted.'' We explore the complexity, in terms of the numbers of unique tile types…

新兴技术 · 计算机科学 2024-03-12 Phillip Drake , Matthew J. Patitz , Scott M. Summers , Tyler Tracy

Much is known in the analysis of a finitely ramified self-similar fractal when the fractal has a harmonic structure: a Dirichlet form which respects the self-similarity of a fractal. What is still an open question is when such structure…

We investigate the role of nondeterminism in Winfree's abstract Tile Assembly Model (aTAM), which was conceived to model artificial molecular self-assembling systems constructed from DNA. Of particular practical importance is to find tile…

计算复杂性 · 计算机科学 2010-11-29 Nathaniel Bryans , Ehsan Chiniforooshan , David Doty , Lila Kari , Shinnosuke Seki

We define the Reflexive Tile Assembly Model (RTAM), which is obtained from the abstract Tile Assembly Model (aTAM) by allowing tiles to reflect across their horizontal and/or vertical axes. We show that the class of directed temperature-1…

计算几何 · 计算机科学 2015-03-13 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

We review some recent results related to the self-assembly of infinite structures in the Tile Assembly Model. These results include impossibility results, as well as novel tile assembly systems in which shapes and patterns that represent…

计算复杂性 · 计算机科学 2009-06-19 Matthew J. Patitz , Scott M. Summers

We introduce a new DNA tile self-assembly model: the Surface Flexible Tile Assembly Model (SFTAM), where 2D tiles are placed on host 3D surfaces made of axis-parallel unit cubes glued together by their faces, called polycubes. The bonds are…

离散数学 · 计算机科学 2023-06-19 Florent Becker , Shahrzad Heydarshahi

This paper concerns the self-assembly of scaled-up versions of arbitrary finite shapes. We work in the multiple temperature model that was introduced by Aggarwal, Cheng, Goldwasser, Kao, and Schweller (Complexities for Generalized Models of…

计算复杂性 · 计算机科学 2009-09-30 Scott M. Summers

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

新兴技术 · 计算机科学 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

We present a strict separation between the class of "mismatch free" self-assembly systems and general aTAM systems. Mismatch free systems are those systems in which concurrently grown parts must always agree with each other. Tile…

计算几何 · 计算机科学 2015-02-20 Florent Becker , Pierre-Étienne Meunier

Fractal structures emerge from statistical and hierarchical processes in urban development or network evolution. In a class of efficient and robust geographical networks, we derive the size distribution of layered areas, and estimate the…

物理与社会 · 物理学 2015-05-20 Yukio Hayashi

Perfect fractals are mathematical objects that, because they are generated by recursive processes, have self-similarity and infinite complexity. In particular, they also have a fractional dimension. Although several proposals for the study…

物理教育 · 物理学 2018-04-04 P. V. S. Souza , R. L. Alves , W. F. Balthazar

This study proposes a method for producing an infinite number of fractals using aperiodic substitution tilings, exemplified by the Ammann Chair tiling. Higher-order substitutions of aperiodic tilings are utilized in relation to the…

度量几何 · 数学 2023-05-19 Kah Heng Lee

The pinwheel triangle of Conway and Radin is a standard example for tilings with self-similarity and statistical circular symmetry. Many modifications were constructed, all based on partitions of triangles or rectangles. The fractal example…

动力系统 · 数学 2023-01-02 Christoph Bandt , Dmitry Mekhontsev , Andrei Tetenov

We introduce the notion of (abelian) similarity scheme, as a constructive model for topological self-similar fractals, in the same way in which the notion of iterated function system furnishes a constructive notion of self-similar fractals…

泛函分析 · 数学 2024-07-11 Fabio E. G. Cipriani , Daniele Guido , Tommaso Isola , Jean-Luc Sauvageot

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this…

计算几何 · 计算机科学 2015-09-24 Sándor P. Fekete , Robert T. Schweller , Andrew Winslow

We show that the Tile Assembly Model exhibits a strong notion of universality where the goal is to give a single tile assembly system that simulates the behavior of any other tile assembly system. We give a tile assembly system that is…

计算复杂性 · 计算机科学 2016-09-08 David Doty , Jack H. Lutz , Matthew J. Patitz , Scott M. Summers , Damien Woods

Fractal lattices, featuring the self-similarity symmetry, are often geometric descents of parent crystals, possessing all their discrete symmetries (such as rotations and reflections) except the translational ones. Here, we formulate three…

介观与纳米尺度物理 · 物理学 2024-12-30 Daniel J. Salib , Aiden J. Mains , Bitan Roy