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The relations connecting perturbations in acoustic and entropy modes in a gas affected by a constant mass force, are derived. The background temperature of a gas may vary in the direction of an external mass force. The relations are…

数学物理 · 物理学 2013-04-05 Anna Perelomova , Sergey Leble

Neither of the two prevalent theories, namely thermodynamic stability and kinetic stability, provides a comprehensive understanding of protein folding. The thermodynamic theory is misleading because it assumes that free energy is the…

生物物理 · 物理学 2013-07-22 Ji Xu , Mengzhi Han , Ying Ren , Jinghai Li

Nonequilibrium thermodynamics of a system situated in a sustained environment with influx and efflux is usually treated as a subsystem in a larger, closed "universe". It remains a question what the minimally required description for the…

统计力学 · 物理学 2013-06-20 Hao Ge , Hong Qian

What makes living things special is how they manage matter, energy, and entropy. A general theory of organismal metabolism should therefore be quantified in these three currencies while capturing the unique way they flow between individuals…

种群与进化 · 定量生物学 2024-08-27 Marko Jusup , Michael R. Kearney

Intestinal apoptosis and expression of apoptosis inducers - the cytokines TNFalpha, TGFbeta1 - and the intestinal transcription factor Cdx2, were studied according to two different metabolic and hormonal phases which characterize long-term…

种群与进化 · 定量生物学 2007-05-23 C. Habold , C. Foltzer-Jourdainne , Y. Le Maho , J. H. Lignot

In the extended phase space, a general method is used to derive all the possible adiabatic processes for charged AdS black hole. Two kinds are found, one is zero temperature adiabatic process which is irreversible, the other is isochore…

高能物理 - 理论 · 物理学 2017-01-18 Shanquan Lan , Wenbiao Liu

One of the most widespread interpretations of the mass-energy equivalence establishes that not only can mass be transformed into energy (e.g., through nuclear fission, fusion, or annihilation) but that every type of energy also has mass…

综合物理 · 物理学 2024-08-27 Germano D'Abramo

Recent studies have revealed the complex structure of nerve signals in axons. Besides the electrical signal, mechanical and thermal effects are also detected in many experimental studies. In this paper, the mathematical models of heat…

生物物理 · 物理学 2021-05-04 Jüri Engelbrecht , Kert Tamm , Tanel Peets

A collisionless plasma possesses a certain amount of "available energy", which is that part of the thermal energy that can be converted into field energy. Here, a calculation is presented of the available energy carried by trapped electrons…

等离子体物理 · 物理学 2022-05-02 R. J. J. Mackenbach , J. H. E. Proll , P. Helander

Natural protein molecules are exceptional polymers. Encoded in apparently random strings of amino-acids, these objects perform clear physical tasks that are rare to find by simple chance. Accurate folding, specific binding, powerful…

生物大分子 · 定量生物学 2017-10-09 Diego U. Ferreiro , Elizabeth A. Komives , Peter G. Wolynes

Molecular motors belonging to the kinesin and myosin super family hydrolyze ATP by cycling through a sequence of chemical states. These cytoplasmic motors are dimers made up of two linked identical monomeric globular proteins. Fueled by the…

生物物理 · 物理学 2022-12-28 Ryota Takaki , Mauro L. Mugnai , D. Thirumalai

Equations that govern the temperature-dependence of the rate constants, Gibbs energies,enthalpies, entropies and heat capacities of activation for folding and unfolding of spontaneously-folding fixed two-state systems have been derived…

软凝聚态物质 · 物理学 2016-05-11 Robert S. Sade

We show that a protein can be trained to recognise multiple conformations, analogous to an associative memory, and provide capacity calculations based on energy fluctuations and information theory. Unlike the linear capacity of a Hopfield…

软凝聚态物质 · 物理学 2007-05-23 Thomas M A Fink , Robin C Ball

Non-adiabatic molecular phenomena, arising from the breakdown of the Born-Oppenheimer approximation, govern the fate of virtually all photo-physical and photochemical processes and limit the quantum efficiency of molecules and other…

量子物理 · 物理学 2024-05-15 N. S. Bassler , M. Reitz , R. Holzinger , A. Vibók , G. J. Halász , B. Gurlek , C. Genes

Grains are widely assumed to be characterized by a single temperature -- derived either from the configurational entropy, or employing the kinetic theory. Yet granular media do have two temperatures, $T_g$ and $T$, pertaining to the grains…

软凝聚态物质 · 物理学 2022-08-23 Mario Liu

Entropy might be a not well defined concept if the system can undergo transformations involving stationary nonequilibria. It might be analogous to the heat content (once called ``caloric'') in transformations that are not isochoric (i.e.…

统计力学 · 物理学 2007-05-23 Giovanni Gallavotti

An all-atom model of proteins is used to show that the same sequence of amino acids can have many alternative structures, that are very distant from, and that can be as stable as, the corresponding native structure. Such alternative…

生物物理 · 物理学 2008-02-11 Leonor Cruzeiro

One reason that free energy difference calculations are notoriously difficult in molecular systems is due to insufficient conformational overlap, or similarity, between the two states or systems of interest. The degree of overlap is…

生物物理 · 物理学 2009-11-11 F. Marty Ytreberg , Daniel M. Zuckerman

We use a relationship between response and correlation function in nonequilibrium systems to establish a connection between the heat production and the deviations from the equilibrium fluctuation-dissipation theorem. This scheme extends the…

统计力学 · 物理学 2014-04-11 E. Lippiello , M. Baiesi , A. Sarracino

Recent developments in statistical mechanics have allowed the estimation of equilibrium free energies from the statistics of work measurements during processes that drive the system out of equilibrium. Here a different class of processes is…

统计力学 · 物理学 2009-11-11 Artur B. Adib