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Adaptation of the chemotaxis sensory pathway of the bacterium Escherichia coli is integral for detecting chemicals over a wide range of background concentrations, ultimately allowing cells to swim towards sources of attractant and away from…

细胞行为 · 定量生物学 2015-05-18 Diana Clausznitzer , Olga Oleksiuk , Linda Lovdok , Victor Sourjik , Robert G. Endres

A common feature of biological self-organization is how active agents communicate with each other or their environment via chemical signaling. Such communications, mediated by self-generated chemical gradients, have consequences for both…

Designing microscopic and nanoscopic self-propelled particles and characterising their motion has become a major scientific challenge over the past decades. To this purpose, phoretic effects, namely propulsion mechanisms relying on local…

软凝聚态物质 · 物理学 2021-04-09 Pierre Illien , Ramin Golestanian , Ayusman Sen

Most computer simulations of molecular dynamics take place under equilibrium conditions--in a closed, isolated system, or perhaps one held at constant temperature or pressure. Sometimes, extra tensions, shears, or temperature gradients are…

统计力学 · 物理学 2022-05-25 Alex Albaugh , Todd R. Gingrich

An active chiral rotor is a spherical object that can generate chiral flows in a fluid by rotating about an axis. For example, if the flow around the upper hemisphere of the chiral rotor is in a clockwise direction, then the flow in the…

软凝聚态物质 · 物理学 2025-01-29 R. Maity , Snigdha Thakur , P. S. Burada

Active matter systems comprise self-propelled particles that move on a substrate while leaving chemical trails that influence other particles through chemotaxis (e.g., slime-depositing bacteria). Orientational chemotaxis manifests as a…

软凝聚态物质 · 物理学 2025-12-11 Aymeric Lutier , Frédéric van Wijland , Jean-Baptiste Fournier

Electrokinetic flows of an aqueous NaCl solution in nanochannels with negatively charged surfaces are studied using molecular dynamics (MD) simulations. The four transport coefficients that characterise the response to weak electric and…

化学物理 · 物理学 2014-06-05 Hiroaki Yoshida , Hideyuki Mizuno , Tomoyuki Kinjo , Hitoshi Washizu , Jean-Louis Barrat

A stochastic walker model is proposed to describe the chemotactic guidance of growth cones, i.e. the tips of developing neurites. The model accounts for the influence of both attractive and repulsive chemical cues, which are emitted by the…

偏微分方程分析 · 数学 2025-11-04 Noah Geltner , Ansgar Jüngel

A model is presented for predicting the capture of magnetic micro/nano-particles in a bioseparation microsystem. This bioseparator consists of an array of conductive elements embedded beneath a rectangular microfluidic channel. The magnetic…

生物物理 · 物理学 2007-05-23 E. P. Furlani , Y. Sahoo , K. C. Ng , J. C. Wortman , T. E. Monk

Chemotaxis plays a crucial role in a variety of processes in biology and ecology. Quite often it acts to improve efficiency of biological reactions; one example is the immune system signalling, where infected tissues release chemokines…

偏微分方程分析 · 数学 2025-08-20 Jing An , Alexander Kiselev , Yao Yao

We consider a rigid assembly of two active Brownian particles, forming an active colloidal dimer, in a gradient of activity. We show analytically that depending on the relative orientation of the two particles the active dimer accumulates…

软凝聚态物质 · 物理学 2022-08-17 Hidde D. Vuijk , Sophie Klempahn , Holger Merlitz , Jens-Uwe Sommer , Abhinav Sharma

In this report, we analyse and simulate a chemotaxis model given by a system of stochastic reaction-diffusion equations posed on an evolving surface.

细胞行为 · 定量生物学 2012-12-10 Don Praveen Amarasinghe , Andrew Aylwin , Pravin Madhavan , Chris Pettitt

Microorganisms often perform chemotaxis, (i.e., sensing and moving toward a region with a higher concentration of an attractive chemical) by changing the rate of tumbling for random walk. We studied several models with internal adaptive…

统计力学 · 物理学 2009-11-11 Masayo Inoue , Kunihiko Kaneko

Various microorganisms and some mammalian cells are able to swim in viscous fluids by performing nonreciprocal body deformations, such as rotating attached flagella or by distorting their entire body. In order to perform chemotaxis, i.e. to…

生物物理 · 物理学 2021-05-06 Benedikt Hartl , Maximilian Hübl , Gerhard Kahl , Andreas Zöttl

An approach based on a lattice version of the Boltzmann kinetic equation for describing multi-phase flows in nano- and micro-corrugated devices is proposed. We specialize it to describe the wetting/dewetting transition of fluids in presence…

元胞自动机与格子气 · 物理学 2007-06-13 R. Benzi , L. Biferale , M. Sbragaglia , S. Succi , F. Toschi

Using Brownian dynamics simulations, we investigate the dynamics of colloids confined in two-dimensional narrow channels driven by a non-uniform force F(y). We considered linear-gradient, parabolic and delta-like driving-force profiles.…

软凝聚态物质 · 物理学 2009-11-05 D. V. Tkachenko , V. R. Misko , F. M. Peeters

Molecular communication (MC) is a bio-inspired method of transmitting information using biochemical signals, promising for novel medical, agricultural, and environmental applications at the intersection of bio-, nano-, and communication…

新兴技术 · 计算机科学 2024-08-20 Eren Akyol , Ahmet Baha Ozturk , Iman Mokari Bolhassan , Murat Kuscu

The microstructure of materials evolves through chemical reactions and mechanical stress, often strongly coupled in phenomena such as pressure solution or crystallization pressure. This article presents MASKE: a simulator to address the…

其他凝聚态物理 · 物理学 2024-09-26 Enrico Masoero

We introduce a model of chemically active particles of a multi-component fluid that can change their interactions with other particles depending on their state. Since such switching of interactions can only be maintained by the input of…

软凝聚态物质 · 物理学 2019-05-01 Dino Osmanovic , Yitzhak Rabin

Self-chemophoresis is an appealing and quite successful interpretation of the motility exhibited by certain chemically active colloidal particles suspended in a solution of their "fuel": the particle has a phoretic response to…

软凝聚态物质 · 物理学 2026-01-06 Alvaro Domínguez , Mihail N. Popescu