相关论文: From H&M to Gap for Lightweight BWT Merging

The quantum PCP conjecture asks whether it is QMA-hard to distinguish between high- and low-energy Hamiltonians even when the gap between "high" and "low" energy is large (constant). A natural proof strategy is gap amplification: start from…

In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these index structures far more complex than a single string, as was originally done with the FM-index…

The remarkable capabilities of Large Language Models (LLMs) are overshadowed by their immense computational cost. While recent work has shown that many LLM layers can be reordered or even removed with minimal impact on accuracy, these…

In this paper, we revisit the much studied problem of Pattern Matching with Swaps (Swap Matching problem, for short). We first present a graph-theoretic model, which opens a new and so far unexplored avenue to solve the problem. Then, using…

The Partitioning Min-Max Weighted Matching (PMMWM) problem, being a practical NP-hard problem, integrates the task of partitioning the vertices of a bipartite graph into disjoint sets of limited size with the classical Maximum-Weight…

One of the greatest efforts of computational scientists is to translate the mathematical model describing a class of physical phenomena into large and complex codes. Many of these codes face the difficulty of implementing the mathematical…

Recently, researchers have extended the concept of matchings to the more general problem of finding $b$-matchings in hypergraphs broadening the scope of potential applications and challenges. The concept of $b$-matchings, where $b$ is a…

The latent block model is used to simultaneously rank the rows and columns of a matrix to reveal a block structure. The algorithms used for estimation are often time consuming. However, recent work shows that the log-likelihood ratios are…

Fine-tuning pretrained models has become a standard pathway to achieve state-of-the-art performance across a wide range of domains, leading to a proliferation of task-specific model variants. As the number of such specialized models…

Compute-and-Forward (C&F) has been proposed as an efficient strategy to reduce the backhaul load for the distributed antenna systems. Finding the optimal coefficients in C&F has commonly been treated as a shortest vector problem (SVP),…

The sort transform (ST) is a modification of the Burrows-Wheeler transform (BWT). Both transformations map an arbitrary word of length n to a pair consisting of a word of length n and an index between 1 and n. The BWT sorts all rotation…

The GVW algorithm is a signature-based algorithm for computing Gr\"obner bases. If the input system is not homogeneous, some J-pairs with higher signatures but lower degrees are rejected by GVW's Syzygy Criterion, instead, GVW have to…

The compression of highly repetitive strings (i.e., strings with many repetitions) has been a central research topic in string processing, and quite a few compression methods for these strings have been proposed thus far. Among them, an…

Maximum entropy methods, rooted in the inverse Ising/Potts problem from statistical physics, are widely used to model pairwise interactions in complex systems across disciplines such as bioinformatics and neuroscience. While successful,…

Compressed suffix arrays (CSAs) index large repetitive collections and are key in many text applications. The r-index and its derivatives combine the run-length Burrows-Wheeler Transform (BWT) with suffix array sampling to achieve space…

Until recently, most experts would probably have agreed we cannot backwards-step in constant time with a run-length compressed Burrows-Wheeler Transform (RLBWT), since doing so relies on rank queries on sparse bitvectors and those inherit…

The Byte Pair Encoding algorithm can be safely batched to merge hundreds of pairs of tokens at a time when building up a tokenizer's vocabulary. This technique combined with reducing the memory footprint of text used in vocabulary training…

Training Long-Context Large Language Models (LLMs) is challenging, as hybrid training with long-context and short-context data often leads to workload imbalances. Existing works mainly use data packing to alleviate this issue, but fail to…

Finding a low-weight multiple (LWPM) of a given polynomial is very useful in the cryptanalysis of stream ciphers and arithmetic in finite fields. There is no known deterministic polynomial time complexity algorithm for solving this problem,…

Merging $T$ sorted, non-redundant lists containing $M$ elements into a single sorted, non-redundant result of size $N \ge M/T$ is a classic problem typically solved practically in $O(M \log T)$ time with a priority-queue data structure the…